DRSC/TRiP Functional Genomics Resources

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Protein Alignment Neu2 and si:ch211-241e1.5

DIOPT Version :10

Sequence 1:NP_649316.1 Gene:Neu2 / 40375 FlyBaseID:FBgn0037085 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_001119897.1 Gene:si:ch211-241e1.5 / 567583 ZFINID:ZDB-GENE-030131-6298 Length:542 Species:Danio rerio


Alignment Length:352 Identity:110/352 - (31%)
Similarity:162/352 - (46%) Gaps:64/352 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 VREEESEN--DGSGCSEEVEAAERDLQDGADDVDSGNEPDINECDIKAKE-------------KP 117
            |::||:|.  |.:...||.:    |::|..:|.:...:|:..:..:...|             ||
Zfish    32 VKDEETEEQIDCTPVKEETQ----DVKDEEEDEEQLIDPESTQTSLSCTETHNKRFKRRRLQTKP 92

  Fly   118 GFSCSHCPKSFQVKSNLKVHMRSHTGERPFTCSLCPKSFGYSSGLQNHMRTHTGERPFQCSHCPR 182
            ||.||.|.|||..:.:|:.|||.||||.||||..|.|.|.....|.:||:.|:||.||:|..|.:
Zfish    93 GFKCSQCGKSFSREGHLESHMRIHTGETPFTCKQCGKRFNQKGNLYSHMKIHSGESPFRCQQCGK 157

  Fly   183 SFTAGHHLKAHIQMHERRGSLRCPYCQKCFLTSLILKQHLATHTDETQFKCSQCSKSFQVEHELW 247
            ||....:||.|:::|.......|.:|.|.|.....|..|:.||:.|..|.|.:|.|||.....|.
Zfish   158 SFNQKGNLKLHMRIHTGECPFTCKHCDKSFSLKGNLMNHMKTHSGERSFACRRCGKSFTQNKTLK 222

  Fly   248 MHMRVHQERLFTCGHCSKDFALHAYLKRHLS--RNARCSQSSKASAHK--------TLGHS---- 298
            .||:||:..  .||.||          ||.|  .:|:||.....:.|:        .:|.|    
Zfish   223 SHMKVHEGD--QCGVCS----------RHRSSCSDAKCSNRHLRTKHEEKQTVECSEMGISDDQR 275

  Fly   299 -------KALKCGKCPKTFTDRSALSTHLKSHTKNKPLLEGPCKSSGSKPAHS---------NAQ 347
                   |..:|.:||::|..:..|..||:.||..||.:   |:..|....|.         :.:
Zfish   276 LTSDDREKPFQCQQCPRSFRLKRFLQLHLRIHTGEKPFV---CRHCGETYTHQGNFKVHVRMHTE 337

  Fly   348 RKPFKCSSCPRTFSRKSALLTHLQTHT 374
            .:||.|..|.:.|..:..|.:|::.||
Zfish   338 ERPFICPHCGKHFHHQGNLRSHMRLHT 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Neu2NP_649316.1 zf-AD 1..63 CDD:462262
COG5048 <119..241 CDD:227381 52/121 (43%)
C2H2 Zn finger 121..141 CDD:275368 10/19 (53%)
zf-H2C2_2 133..156 CDD:463886 14/22 (64%)
C2H2 Zn finger 149..169 CDD:275368 7/19 (37%)
zf-H2C2_2 162..185 CDD:463886 11/22 (50%)
C2H2 Zn finger 177..197 CDD:275368 7/19 (37%)
C2H2 Zn finger 205..225 CDD:275368 6/19 (32%)
zf-C2H2_8 206..286 CDD:464935 29/81 (36%)
C2H2 Zn finger 233..253 CDD:275368 8/19 (42%)
C2H2 Zn finger 260..297 CDD:275368 11/46 (24%)
C2H2 Zn finger 303..323 CDD:275368 7/19 (37%)
C2H2 Zn finger 353..373 CDD:275368 5/19 (26%)
si:ch211-241e1.5NP_001119897.1 COG5048 <94..252 CDD:227381 68/169 (40%)
C2H2 Zn finger 96..116 CDD:275368 10/19 (53%)
C2H2 Zn finger 124..144 CDD:275368 7/19 (37%)
C2H2 Zn finger 152..172 CDD:275368 7/19 (37%)
C2H2 Zn finger 180..200 CDD:275368 6/19 (32%)
C2H2 Zn finger 208..228 CDD:275368 8/19 (42%)
C2H2 Zn finger 287..307 CDD:275368 7/19 (37%)
SFP1 <309..398 CDD:227516 14/59 (24%)
C2H2 Zn finger 315..335 CDD:275368 3/19 (16%)
C2H2 Zn finger 343..363 CDD:275368 5/19 (26%)
C2H2 Zn finger 371..391 CDD:275368
C2H2 Zn finger 419..436 CDD:275368
C2H2 Zn finger 447..467 CDD:275368
C2H2 Zn finger 519..539 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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