DRSC/TRiP Functional Genomics Resources

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Protein Alignment Neu2 and znf1041

DIOPT Version :9

Sequence 1:NP_649316.1 Gene:Neu2 / 40375 FlyBaseID:FBgn0037085 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_001107903.1 Gene:znf1041 / 565096 ZFINID:ZDB-GENE-080213-11 Length:443 Species:Danio rerio


Alignment Length:280 Identity:106/280 - (37%)
Similarity:146/280 - (52%) Gaps:37/280 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 IKAKEKPGFSCSHCPKSFQVKSNLKVHMRSHTGERPFTCSLCPKSFGYSSGLQNHMRTHTGERPF 175
            |...||| :||..|.|||:....|||||||||||||:||.||.|||..:.....|||.||||||:
Zfish   182 IHTGEKP-YSCIQCGKSFKQNGTLKVHMRSHTGERPYTCQLCGKSFYTTGNFAQHMRIHTGERPY 245

  Fly   176 QCSHCPRSFTAGHHLKAHIQMHERRGSLRCPYCQKCFLTSLILKQHLATHTDETQFKCSQCSKSF 240
            .|..|.:||....:|.||:::|.......||.|.|.|..:..|:.|:.||..|....|:||.|||
Zfish   246 TCQQCGKSFYQSANLAAHMRIHTGEKPYSCPQCGKSFKQNSNLEAHIKTHNRERSITCTQCKKSF 310

  Fly   241 QVEHELWMHMRVHQ-ERLFTCGHCSKDFALHAYLKRHLSRN--------ARCSQSSKASAHKTL- 295
            ..:.:|.:|||:|. |:.:||..|.|.|.....||.|:..:        |:|.:|....|..|: 
Zfish   311 AQKQDLEIHMRIHTGEKPYTCTECGKGFTCKGTLKHHMISHTGEKPFACAQCGKSFTTKASLTIH 375

  Fly   296 --GHSKAL--KCGKCPKTFTDRSALSTHLKSHTKNKPLLEGPCKSSGSKPAHSNAQRKPFKCSSC 356
              ||:..:  .|.:|.||.|.:.::..|:|:|             ||         ..||:||.|
Zfish   376 MNGHTGTIVFTCDQCGKTLTRKDSIKRHMKTH-------------SG---------EDPFRCSEC 418

  Fly   357 PRTFSRKSALLTHLQTHTGK 376
            .::|..|.:|.||::.|.|:
Zfish   419 GKSFKHKRSLNTHMKLHNGE 438

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Neu2NP_649316.1 zf-AD 1..63 CDD:285071
COG5048 <119..241 CDD:227381 58/121 (48%)
C2H2 Zn finger 121..141 CDD:275368 11/19 (58%)
zf-H2C2_2 133..158 CDD:290200 20/24 (83%)
C2H2 Zn finger 149..169 CDD:275368 9/19 (47%)
zf-H2C2_2 162..185 CDD:290200 12/22 (55%)
C2H2 Zn finger 177..197 CDD:275368 7/19 (37%)
C2H2 Zn finger 205..225 CDD:275368 7/19 (37%)
zf-C2H2_8 206..286 CDD:292531 31/88 (35%)
C2H2 Zn finger 233..253 CDD:275368 10/19 (53%)
C2H2 Zn finger 260..297 CDD:275368 12/47 (26%)
C2H2 Zn finger 303..323 CDD:275368 7/19 (37%)
C2H2 Zn finger 353..373 CDD:275368 8/19 (42%)
znf1041NP_001107903.1 C2H2 Zn finger 79..99 CDD:275368
zf-H2C2_2 91..114 CDD:290200
COG5048 103..>429 CDD:227381 101/269 (38%)
C2H2 Zn finger 107..127 CDD:275368
zf-H2C2_2 119..142 CDD:290200
C2H2 Zn finger 135..155 CDD:275368