DRSC/TRiP Functional Genomics Resources

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Protein Alignment Neu2 and CG8478

DIOPT Version :9

Sequence 1:NP_649316.1 Gene:Neu2 / 40375 FlyBaseID:FBgn0037085 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_001163576.1 Gene:CG8478 / 41194 FlyBaseID:FBgn0037746 Length:576 Species:Drosophila melanogaster


Alignment Length:432 Identity:89/432 - (20%)
Similarity:148/432 - (34%) Gaps:111/432 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 DPLSNTICKSCLEDAQNAFDIIETYERS-----HQFYRFLKDVREE---ESENDGSGCSEEVEAA 87
            |..:||:..:.|:......|.:...|.:     .|.|....:|..|   |..|:|.........|
  Fly   162 DVTANTVKANTLKTGDATMDNVSLQEAAKTPAPSQVYPLSANVVLENITEVSNEGVSMLVSPAGA 226

  Fly    88 ERDLQDGADDVDSGNEPDINECDIKAKEKPGFSCSHCPKSFQVKSNLKVHMRSHTGERPFTCSLC 152
            |:::....:.|:     :::|...||.:....|........:|::..|....|.|    ::.:..
  Fly   227 EKEVAHVNEVVN-----EVSELIAKALKISADSVKPATSKLKVEAGKKRQSMSST----YSGAAL 282

  Fly   153 PKSFGYSSGLQNHMRTHTGERPFQCSHCPRSFTAGHHL----KAHIQMHERRGSL---------R 204
            |:.      .::::.|.|.|        .|:::....:    |..:....|:.|:         .
  Fly   283 PRP------RRSYLPTTTAE--------TRTYSFKQRMSVVVKTTLNSPARKRSVGGGVSLSRRS 333

  Fly   205 CPYCQKCFLTSLILKQHLA----------------THT---DETQFKCSQCSKSFQVEHELWMHM 250
            |....|  ||...:::.||                |.|   .|..|.|..||.:|:|:..|.:||
  Fly   334 CLPVSK--LTKSSIRKSLAVTSVRSPEKIASKPAKTSTKSIPEKVFSCKNCSTTFRVKSLLDVHM 396

  Fly   251 RVHQ---------ERLFT-----------CGHCSKDFALHAYLKRHLSRNARCSQSSKASAHK-- 293
            |:|.         :||.:           |..|.|:|||...|..||.:|  |.:...:...|  
  Fly   397 RMHDPVDNGANTLKRLNSNPVAAGVSKNRCKFCDKNFALERALHIHLMQN--CDKIPPSEKRKLE 459

  Fly   294 --TLGHSKALKCGKC--------PKTFTDR--SALST--HLKSHTKNKPLLEGPCKSSGSKPAHS 344
              .|.|.|..:..|.        |.|...:  ..:||  .|......:.:.....|......||:
  Fly   460 FTELNHEKKAQLPKIGGTSGINHPMTMPQKPQQRISTIPKLAPSQGTQSMAPPSVKKIPKNVAHA 524

  Fly   345 NAQRKPFK---CSSCPRTFSRKSALLTH-LQTHTGKLGTNRM 382
            ...|.|.|   |..|.::|........| |..|    |.|::
  Fly   525 GVYRTPTKTVPCHICKQSFRSILEFTNHSLTVH----GNNQL 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Neu2NP_649316.1 zf-AD 1..63 CDD:285071 7/36 (19%)
COG5048 <119..241 CDD:227381 26/153 (17%)
C2H2 Zn finger 121..141 CDD:275368 2/19 (11%)
zf-H2C2_2 133..158 CDD:290200 4/24 (17%)
C2H2 Zn finger 149..169 CDD:275368 1/19 (5%)
zf-H2C2_2 162..185 CDD:290200 4/22 (18%)
C2H2 Zn finger 177..197 CDD:275368 2/23 (9%)
C2H2 Zn finger 205..225 CDD:275368 6/35 (17%)
zf-C2H2_8 206..286 CDD:292531 32/118 (27%)
C2H2 Zn finger 233..253 CDD:275368 9/19 (47%)
C2H2 Zn finger 260..297 CDD:275368 13/40 (33%)
C2H2 Zn finger 303..323 CDD:275368 6/31 (19%)
C2H2 Zn finger 353..373 CDD:275368 5/20 (25%)
CG8478NP_001163576.1 zf-C2H2 377..399 CDD:278523 10/21 (48%)
C2H2 Zn finger 379..399 CDD:275368 9/19 (47%)
C2H2 Zn finger 426..444 CDD:275368 8/17 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24409
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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