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Protein Alignment Neu2 and CG1529

DIOPT Version :10

Sequence 1:	NP_649316.1	Gene:	Neu2 / 40375	FlyBaseID:	FBgn0037085	Length:	382	Species:	Drosophila melanogaster
Sequence 2:	NP_001138223.2	Gene:	CG1529 / 33077	FlyBaseID:	FBgn0031144	Length:	512	Species:	Drosophila melanogaster

Alignment Length:	328	Identity:	91/328 - (27%)
Similarity:	134/328 - (40%)	Gaps:	42/328 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly    21 KCTGWQVEKHDPLSNTICKSCLEDAQNAFDIIETYERS-HQFYRFLKDVREEESENDGSGCSEEV 84
            |..|||     |:...:.:...|.....  :.|.:|.: |:.        |||.|....|...::
  Fly    78 KLIGWQ-----PVDIAVDRVKEEPPDEG--LKENHEENEHEL--------EEEHEKQADGQQVDL 127

  Fly    85 EAAERDLQDGADDVDSGNEPDINECDIK-------AKEKPGFSCSHCPKSFQVKSNLKVHMRS-H 141
            ...:.|.:...||.:....||..|...:       :|.:.|.:|..|.|.......|:.|:|| |
  Fly   128 SKKQEDQKKILDDREDEEYPDEYENSQQQLSQGTGSKRRAGLACDQCGKQVYKLPYLEAHIRSVH 192

  Fly   142 TG-ERPFTCSLCPKSFGYSSGLQNHMRTHTGE--------RPFQCSHCPRSFTAGHHLKAHIQMH 197
            .| .:||.|..|.|||.....|::|||....:        |...|..|.|.::..:.|..|::.|
  Fly   193 QGYSKPFLCRSCDKSFTRYEQLRSHMRNAHPQLEQLQQELRDLICELCNRQYSTKNALGEHLKRH 257

  Fly   198 ERRGSLRCPYCQKCFLTSLILKQHLATHTDE-TQFKCSQCSKSFQVEHELWMHMR-VHQ-ERLFT 259
            .:|....|.:|....:|...|..||.||... .:|||.||.:.|:.:..:..|:| ||: :|.|.
  Fly   258 AQRKEHVCEHCGVAKVTRTELLTHLRTHNPTWERFKCEQCPQLFRHKSAISRHVRVVHEGQRRFQ 322

  Fly   260 CGHCSKDFALHAYLKRHLSRNARCSQSSKASAHKTLGHSKALKCGKCPKTFTDRSALSTHLKSHT 324
            ||||.|.|..||...||...:...:.|.:|:      ......|..|.|....|..|..||:.|.
  Fly   323 CGHCEKKFGTHASQVRHERLHTESTGSGEAA------EEWPFACIHCQKPCVSRQTLELHLRRHR 381

  Fly   325 KNK 327
            ..|
  Fly   382 ARK 384

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.