DRSC/TRiP Functional Genomics Resources

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Protein Alignment Neu2 and sfc2

DIOPT Version :9

Sequence 1:NP_649316.1 Gene:Neu2 / 40375 FlyBaseID:FBgn0037085 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_594670.1 Gene:sfc2 / 2542887 PomBaseID:SPAC144.09c Length:374 Species:Schizosaccharomyces pombe


Alignment Length:310 Identity:91/310 - (29%)
Similarity:130/310 - (41%) Gaps:62/310 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 NECDIKAKEKPGFSCS---HCP-----KSFQVKSNLKVHMRSHTGERPFTCSL--CPKSFGYSSG 161
            ||..|:.:.|...|..   |||     |.:...|.|:.|:|:|:.||||.|..  |.|:|...|.
pombe     5 NELSIEIESKNLRSAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSH 69

  Fly   162 LQNHMRTHTGERPFQCSH--CPRSFTAGHHLKAHIQMHERRGSLRCPY--CQKCFLTSLILKQHL 222
            |:.|.|.||..:||.|.:  |...|....||:.||::|.:.....|.:  |.:||.....|:.|:
pombe    70 LKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHI 134

  Fly   223 -ATHTDETQFKCS--QCSKSFQVEHELWMHM-RVHQERL-FTCGHCS----KDFALHAYLKRHLS 278
             |.||....:.|:  .|...|..:.:|..|: |.|::.: ::|.|.|    :.|...:.|:.|: 
pombe   135 SACHTHLLPYPCTYQDCELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQNHI- 198

  Fly   279 RNAR------CSQSSKASAH---------KTLGHSKALKCGK--CPKTFTDRSALSTHLKSHTKN 326
            |.|.      |.:..|.:||         .||...|...|..  |.|:||..|||..|:      
pombe   199 REAHVPSCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHI------ 257

  Fly   327 KPLLEGPCKSSGSKPAHSNAQRKPFKCSSCPRTFSRKSALLTHLQTHTGK 376
            ..:.||               ...|.|.||...|..|..|..||:..|.|
pombe   258 SVIHEG---------------NMAFHCDSCGTKFGYKHMLQRHLERGTCK 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Neu2NP_649316.1 zf-AD 1..63 CDD:285071
COG5048 <119..241 CDD:227381 45/138 (33%)
C2H2 Zn finger 121..141 CDD:275368 8/27 (30%)
zf-H2C2_2 133..158 CDD:290200 12/26 (46%)
C2H2 Zn finger 149..169 CDD:275368 8/21 (38%)
zf-H2C2_2 162..185 CDD:290200 9/24 (38%)
C2H2 Zn finger 177..197 CDD:275368 7/21 (33%)
C2H2 Zn finger 205..225 CDD:275368 7/22 (32%)
zf-C2H2_8 206..286 CDD:292531 24/96 (25%)
C2H2 Zn finger 233..253 CDD:275368 6/22 (27%)
C2H2 Zn finger 260..297 CDD:275368 14/55 (25%)
C2H2 Zn finger 303..323 CDD:275368 9/21 (43%)
C2H2 Zn finger 353..373 CDD:275368 8/19 (42%)
sfc2NP_594670.1 COG5048 1..374 CDD:227381 91/310 (29%)
C2H2 Zn finger 28..47 CDD:275368 5/18 (28%)
C2H2 Zn finger 55..77 CDD:275368 8/21 (38%)
C2H2 Zn finger 85..107 CDD:275368 7/21 (33%)
C2H2 Zn finger 115..138 CDD:275368 7/22 (32%)
C2H2 Zn finger 146..165 CDD:275368 4/18 (22%)
C2H2 Zn finger 206..226 CDD:275368 4/19 (21%)
C2H2 Zn finger 238..261 CDD:275368 9/28 (32%)
C2H2 Zn finger 269..286 CDD:275368 6/16 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I1382
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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