DRSC/TRiP Functional Genomics Resources

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Protein Alignment Neu2 and sfc2

DIOPT Version :10

Sequence 1:NP_649316.1 Gene:Neu2 / 40375 FlyBaseID:FBgn0037085 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_594670.1 Gene:sfc2 / 2542887 PomBaseID:SPAC144.09C Length:374 Species:Schizosaccharomyces pombe


Alignment Length:310 Identity:91/310 - (29%)
Similarity:130/310 - (41%) Gaps:62/310 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 NECDIKAKEKPGFSCS---HCP-----KSFQVKSNLKVHMRSHTGERPFTCSL--CPKSFGYSSG 161
            ||..|:.:.|...|..   |||     |.:...|.|:.|:|:|:.||||.|..  |.|:|...|.
pombe     5 NELSIEIESKNLRSAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSH 69

  Fly   162 LQNHMRTHTGERPFQCSH--CPRSFTAGHHLKAHIQMHERRGSLRCPY--CQKCFLTSLILKQHL 222
            |:.|.|.||..:||.|.:  |...|....||:.||::|.:.....|.:  |.:||.....|:.|:
pombe    70 LKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFSKHQQLRSHI 134

  Fly   223 -ATHTDETQFKCS--QCSKSFQVEHELWMHM-RVHQERL-FTCGHCS----KDFALHAYLKRHLS 278
             |.||....:.|:  .|...|..:.:|..|: |.|::.: ::|.|.|    :.|...:.|:.|: 
pombe   135 SACHTHLLPYPCTYQDCELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQNHI- 198

  Fly   279 RNAR------CSQSSKASAH---------KTLGHSKALKCGK--CPKTFTDRSALSTHLKSHTKN 326
            |.|.      |.:..|.:||         .||...|...|..  |.|:||..|||..|:      
pombe   199 REAHVPSCSICGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHI------ 257

  Fly   327 KPLLEGPCKSSGSKPAHSNAQRKPFKCSSCPRTFSRKSALLTHLQTHTGK 376
            ..:.||               ...|.|.||...|..|..|..||:..|.|
pombe   258 SVIHEG---------------NMAFHCDSCGTKFGYKHMLQRHLERGTCK 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Neu2NP_649316.1 zf-AD 1..63 CDD:462262
COG5048 <119..241 CDD:227381 45/138 (33%)
C2H2 Zn finger 121..141 CDD:275368 8/27 (30%)
zf-H2C2_2 133..156 CDD:463886 11/24 (46%)
C2H2 Zn finger 149..169 CDD:275368 8/21 (38%)
zf-H2C2_2 162..185 CDD:463886 9/24 (38%)
C2H2 Zn finger 177..197 CDD:275368 7/21 (33%)
C2H2 Zn finger 205..225 CDD:275368 7/22 (32%)
zf-C2H2_8 206..286 CDD:464935 24/96 (25%)
C2H2 Zn finger 233..253 CDD:275368 6/22 (27%)
C2H2 Zn finger 260..297 CDD:275368 14/55 (25%)
C2H2 Zn finger 303..323 CDD:275368 9/21 (43%)
C2H2 Zn finger 353..373 CDD:275368 8/19 (42%)
sfc2NP_594670.1 COG5048 1..374 CDD:227381 91/310 (29%)
C2H2 Zn finger 28..47 CDD:275368 5/18 (28%)
C2H2 Zn finger 55..77 CDD:275368 8/21 (38%)
C2H2 Zn finger 85..107 CDD:275368 7/21 (33%)
C2H2 Zn finger 115..138 CDD:275368 7/22 (32%)
C2H2 Zn finger 146..165 CDD:275368 4/18 (22%)
C2H2 Zn finger 206..226 CDD:275368 4/19 (21%)
C2H2 Zn finger 238..261 CDD:275368 9/28 (32%)
C2H2 Zn finger 269..286 CDD:275368 6/16 (38%)
Blue background indicates that the domain is not in the aligned region.

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