DRSC/TRiP Functional Genomics Resources

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Protein Alignment Neu2 and let-391

DIOPT Version :10

Sequence 1:NP_649316.1 Gene:Neu2 / 40375 FlyBaseID:FBgn0037085 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_491744.3 Gene:let-391 / 182953 WormBaseID:WBGene00006492 Length:453 Species:Caenorhabditis elegans


Alignment Length:359 Identity:82/359 - (22%)
Similarity:139/359 - (38%) Gaps:65/359 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 EEESEND-------GSGCSEEVEAAERDLQDGADDVDS------GNE--PDINECDIKAKEKPGF 119
            |:..||.       .:.|:.:.:....:|::.....||      ||:  |.:..|::        
 Worm     5 EDLDENSDAIFEEWAAECTPDAQKEHEELEEIVKIPDSTYRKKKGNQKLPTVTTCEV-------- 61

  Fly   120 SCSHCPKSFQVKSNLKVHMRSHTGERPFTCSLCPKSFGYSSGLQNHMRT-HTGERPFQCSH-CPR 182
                |..:.:..|.:..|||:||||:|:.|.:|...|...:.:.||.|. |.|:.||.|:. |.:
 Worm    62 ----CGVALKYPSRIMEHMRTHTGEKPYECDICGMRFTQRTPMINHFRVQHMGDLPFLCNFGCGK 122

  Fly   183 SFTAGHHLKAHIQMH---ERRGSLR----------CPYCQKCFLTSLILKQHLATHTDETQFKCS 234
            .|.......||...|   :|.|..|          ||......|::..|..:::..|.::.|:..
 Worm   123 RFVNNSRRTAHELSHNGLKRAGPARPYLKPVKKIVCPSMDMDILSNSALANYISPPTIDSIFQSD 187

  Fly   235 QCSKS-----FQVEHELWMHMRVHQERLFTCGHCSK---DFALHAYLKRHLS---RNARCSQSSK 288
            ..:.|     ||..::.........|:.......|.   |..::..|.|.|:   ......:..|
 Worm   188 PSTSSSSPSQFQSSNQTTKQSIYPSEKEMEKAAISNARIDDVINTVLARVLAPIDEEIPIEEPEK 252

  Fly   289 ASAHKT-LGHSKA--LKCGKCPKTFTDRSALSTHLKSHTKNKPLLEGPCKSSGSKPA-------H 343
            |...:. :.:.:|  .:|..|.......|.::.|:::||..||...|.|..|.||.:       .
 Worm   253 APQKRAYISNRRATLAQCNICGLMLKHPSKIADHIRTHTGEKPFECGECGLSLSKASSLKVHIRR 317

  Fly   344 SNAQRKPFKCS-SCPRTFSRKSALLTHLQT-HTG 375
            .:...:||:|: .|..:|...|....|..| |||
 Worm   318 MHTGERPFECTWRCGLSFVTDSVRKEHEMTVHTG 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Neu2NP_649316.1 zf-AD 1..63 CDD:462262
COG5048 <119..241 CDD:227381 36/141 (26%)
C2H2 Zn finger 121..141 CDD:275368 5/19 (26%)
zf-H2C2_2 133..156 CDD:463886 10/22 (45%)
C2H2 Zn finger 149..169 CDD:275368 6/20 (30%)
zf-H2C2_2 162..185 CDD:463886 9/24 (38%)
C2H2 Zn finger 177..197 CDD:275368 5/20 (25%)
C2H2 Zn finger 205..225 CDD:275368 4/19 (21%)
zf-C2H2_8 206..286 CDD:464935 14/90 (16%)
C2H2 Zn finger 233..253 CDD:275368 3/24 (13%)
C2H2 Zn finger 260..297 CDD:275368 7/43 (16%)
C2H2 Zn finger 303..323 CDD:275368 4/19 (21%)
C2H2 Zn finger 353..373 CDD:275368 6/21 (29%)
let-391NP_491744.3 C2H2 Zn finger 357..377 CDD:275368
C2H2 Zn finger 59..79 CDD:275368 6/31 (19%)
zf-H2C2_2 73..96 CDD:463886 11/22 (50%)
C2H2 Zn finger 87..108 CDD:275368 6/20 (30%)
C2H2 Zn finger 116..137 CDD:275368 5/20 (25%)
C2H2 Zn finger 270..290 CDD:275368 4/19 (21%)
zf-H2C2_2 286..>302 CDD:463886 6/15 (40%)
C2H2 Zn finger 298..319 CDD:275368 5/20 (25%)
C2H2 Zn finger 327..347 CDD:275368 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.

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