DRSC/TRiP Functional Genomics Resources

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Protein Alignment Neu2 and LOC108179178

DIOPT Version :9

Sequence 1:NP_649316.1 Gene:Neu2 / 40375 FlyBaseID:FBgn0037085 Length:382 Species:Drosophila melanogaster
Sequence 2:XP_017211288.1 Gene:LOC108179178 / 108179178 -ID:- Length:331 Species:Danio rerio


Alignment Length:349 Identity:105/349 - (30%)
Similarity:150/349 - (42%) Gaps:72/349 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 VREEESENDGSGCSEEVEAAE------RDLQDGAD------DVDSGNEPDINECDIKAKEKP--- 117
            ::||         ||:||..|      .|||:..|      :....|:.:....:|.|.|||   
Zfish     4 IKEE---------SEDVEIEETFIVKQEDLQEQTDLMVLKEETQQWNKMEEQHQEITADEKPTLT 59

  Fly   118 ----------------GFSCSHCPKSFQVKSNLKVHMRSHTGERPFTCSLCPKSFGYSSGLQNHM 166
                            .||...|.|||..|.||.||||.|..|:|:||..|.||||.....:.||
Zfish    60 EKTSSLGRPRKSKTECNFSSKQCRKSFSQKLNLGVHMRVHIREKPYTCEQCGKSFGQKKSFKTHM 124

  Fly   167 RTHTGERPFQCSHCPRSFTAGHHLKAHIQMHERRGSLRCPYCQKCFLTSLILKQHLATHTDETQF 231
            |.||||||:.|..|.:||....:...|.::|.......|..|.|.|..|..||.|:.||....:|
Zfish   125 RIHTGERPYTCQQCGKSFCQAGNFAVHKRIHTGERPYTCQQCGKSFTQSGNLKDHIRTHNGGKKF 189

  Fly   232 KCSQCSKSFQVEHELWMHMRVHQ-ERLFTCGHCSKDFALHAYLKRHLSRNARCSQSSKASAHKTL 295
            .|:||.|||..:.:...||.:|. |:.:.|..|.|.|...:.|..|:                 :
Zfish   190 ACTQCGKSFAQKQKHDTHMTIHTGEKPYRCTECGKSFTCKSALNNHM-----------------I 237

  Fly   296 GHS--KALKCGKCPKTFTDRSALSTHLKSHTK---------NKPLLEGPCKSSGSKPAHSNAQRK 349
            .|:  |...|.:|.|:||.:::|..|:..|:.         .|.|   .||....:...::::..
Zfish   238 SHTGEKPFACAQCGKSFTTKASLKNHMDGHSGIIVFICDQCGKSL---TCKDYIKQHMKNHSRED 299

  Fly   350 PFKCSSCPRTFSRKSALLTHLQTH 373
            .|:||.|..:|.:|..|..|::.|
Zfish   300 RFRCSECGMSFKQKINLSAHMKLH 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Neu2NP_649316.1 zf-AD 1..63 CDD:285071
COG5048 <119..241 CDD:227381 54/121 (45%)
C2H2 Zn finger 121..141 CDD:275368 11/19 (58%)
zf-H2C2_2 133..158 CDD:290200 15/24 (63%)
C2H2 Zn finger 149..169 CDD:275368 9/19 (47%)
zf-H2C2_2 162..185 CDD:290200 12/22 (55%)
C2H2 Zn finger 177..197 CDD:275368 5/19 (26%)
C2H2 Zn finger 205..225 CDD:275368 8/19 (42%)
zf-C2H2_8 206..286 CDD:292531 26/80 (33%)
C2H2 Zn finger 233..253 CDD:275368 8/19 (42%)
C2H2 Zn finger 260..297 CDD:275368 6/36 (17%)
C2H2 Zn finger 303..323 CDD:275368 7/19 (37%)
C2H2 Zn finger 353..373 CDD:275368 7/19 (37%)
LOC108179178XP_017211288.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
00.000

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