DRSC/TRiP Functional Genomics Resources

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Protein Alignment croc and Foxf1

DIOPT Version :10

Sequence 1:NP_524202.1 Gene:croc / 40374 FlyBaseID:FBgn0014143 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_001387935.1 Gene:Foxf1 / 687536 RGDID:1584229 Length:378 Species:Rattus norvegicus


Alignment Length:425 Identity:126/425 - (29%)
Similarity:170/425 - (40%) Gaps:111/425 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 QTAAGYGSASAVAAASSASAAAAAHYAYDQYSRYPYSASAYGLGAPHQNKEIVKPPYSYIALIAM 81
            |...|.|:.....|...|...|||.         |..|.....|.    :...||||||||||.|
  Rat     8 QPPHGGGTGGGGGAGGQAMDPAAAG---------PTKAKKTNAGV----RRPEKPPYSYIALIVM 59

  Fly    82 AIQNAADKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFVKVARDDKKPGKGSYWTL 146
            |||::..|::||:.|||::..|||::|...|||:||:||||||||||:|:.:...:||||.|||:
  Rat    60 AIQSSPSKRLTLSEIYQFLQARFPFFRGAYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTI 124

  Fly   147 DPDSYNMFDNGSFLRRRRRFKKKDVMREKEEAIKRQAMMNEKLAEMKPLKLMTNGILEAKHMAAH 211
            ||.|..||:.|||.||.|.|::                   |...:||:..|.|| |...|:.. 
  Rat   125 DPASEFMFEEGSFRRRPRGFRR-------------------KCQALKPVYSMVNG-LGFNHLPD- 168

  Fly   212 AAHFKKEPLMDLGCLSGKEVSHAAMLNSCHDSLAQMN-HLAGGGVEHPGFTVDSLMNVYNPRIHH 275
                      ..|......:|.|....:....|..|| ||.|        .||.:          
  Rat   169 ----------TYGFQGSGGLSCAPNSLALEGGLGMMNGHLTG--------NVDGM---------- 205

  Fly   276 SAYPYHLNEDNLATVASSQMHHVHHAAAAHHAQQLQRHVAHV-AHPLTPGGQGAGGQSSGHSPTT 339
             |.|.|    ::..:.|:..|..........|.:...|.:.| |.||.|.  ||||....|:..:
  Rat   206 -ALPSH----SVPHLPSNGGHSYMGGCGGSAAGEYPHHDSSVPASPLLPA--GAGGVMEPHAVYS 263

  Fly   340 ISTPHGPA-------HGGWY------TPETPPSEPV-----------------PHNGQ---QGTP 371
            .|....|.       .|..|      :|..|.:.|:                 .|||.   ||.|
  Rat   264 SSAAAWPPAASAALNSGASYIKQQPLSPCNPAANPLSGSISTHSLDQPYLHQNSHNGPAELQGIP 328

  Fly   372 THPGHNNNNS-----SSVLNHNGVGNGGGGGGGGG 401
            .:  |:.:.|     ..|.:.|.:.:......|||
  Rat   329 RY--HSQSPSMCDRKEFVFSFNAMASSSMHTTGGG 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crocNP_524202.1 FH_FOX 69..159 CDD:469596 53/89 (60%)
Foxf1NP_001387935.1 FH_FOXF1 49..147 CDD:410823 58/116 (50%)

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