DRSC/TRiP Functional Genomics Resources

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Protein Alignment croc and Foxb1

DIOPT Version :10

Sequence 1:NP_524202.1 Gene:croc / 40374 FlyBaseID:FBgn0014143 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_001013266.2 Gene:Foxb1 / 367106 RGDID:1305217 Length:325 Species:Rattus norvegicus


Alignment Length:419 Identity:121/419 - (28%)
Similarity:175/419 - (41%) Gaps:128/419 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 KPPYSYIALIAMAIQNAADKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFVKVARD 134
            |||||||:|.|||||::.:|.:.|:.||::||:||||||:|.|.||||:|||||.|:||:|:.|.
  Rat    13 KPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENTQRWQNSLRHNLSFNDCFIKIPRR 77

  Fly   135 DKKPGKGSYWTLDPDSYNMFDNGSFLRRRRRFKKKDVMREKEEAIKRQAMMNEKLAEMKPLK--- 196
            ..:|||||:|.|.|...:||:||||||||:|||               .:.::.||..||..   
  Rat    78 PDQPGKGSFWALHPSCGDMFENGSFLRRRKRFK---------------VLKSDHLAPSKPADAAQ 127

  Fly   197 -LMTNGILEAKHMAAHAAHFKKEPLMDLGCLSGKEVSHAAMLNSCHDSLAQMNHLAG----GGVE 256
             |.....|....:||...|..:.|              ||..|           |.|    .|.:
  Rat   128 YLQQQAKLRLSALAASGTHLPQMP--------------AAAYN-----------LGGVAQPSGFK 167

  Fly   257 HPGFTVDSLM------------NVYNPRIHHSAYPYHLNEDNLATVASSQMHHVHHAAAAHHAQQ 309
            || |.:::::            :...|  ..:|||.   .:.|.|:.||                
  Rat   168 HP-FAIENIIAREYKMPGGLAFSAMQP--VPAAYPL---PNQLTTMGSS---------------- 210

  Fly   310 LQRHVAHVAHPLTPGGQGAGGQSSGHSPTTISTPHGPAHGGWYTPETPPSEPVPHNGQQGTPTHP 374
            |.....||        .|:.|.....:|.::::       |.|:....|.:|:.|...|..|..|
  Rat   211 LGTGWPHV--------YGSAGMIDSATPISMAS-------GDYSAYGVPLKPLCHAAGQTLPAIP 260

  Fly   375 GHNNNNSSSVLNHNGVGNGGGGGGGGGGGSSSVLTSSPTSALGFRDMIFEQNQSCQLDTGSPTGS 439
            .......::|.....:          .....::|::||.|.                   |||.|
  Rat   261 VPIKPTPAAVPALPAL----------PAPIPTLLSNSPPSL-------------------SPTSS 296

  Fly   440 --LQSASPPASASVAAASAAAAAAVISSH 466
              ..|.|.||:.|....|.|:|...::.|
  Rat   297 QTATSQSSPATPSETLTSPASALHSVAVH 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crocNP_524202.1 FH_FOX 69..159 CDD:469596 53/88 (60%)
Foxb1NP_001013266.2 FH_FOXB2 1..110 CDD:410817 60/96 (63%)

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