DRSC/TRiP Functional Genomics Resources

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Protein Alignment croc and Foxj3

DIOPT Version :10

Sequence 1:NP_524202.1 Gene:croc / 40374 FlyBaseID:FBgn0014143 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_001101441.1 Gene:Foxj3 / 313554 RGDID:1311770 Length:622 Species:Rattus norvegicus


Alignment Length:414 Identity:108/414 - (26%)
Similarity:163/414 - (39%) Gaps:105/414 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 SAYGLGAPHQN-----------KEIV-----KPPYSYIALIAMAIQNAADKKVTLNGIYQYIMER 103
            :|:|.|...:|           :|:.     ||||||.:||..||.::..||:||:.|||:|.:.
  Rat    47 NAHGTGISKKNALLDPNTTLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDN 111

  Fly   104 FPYYRDNKQGWQNSIRHNLSLNECFVKVARDDKKPGKGSYWTLDPDSYNMFDNGSFLRRRRRFKK 168
            |||||:...||:||||||||||:||:||.|....|||||||.:|.:     .....|..|.:.:.
  Rat   112 FPYYREAGSGWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTN-----PKEDTLPTRPKKRA 171

  Fly   169 KDVMREK------EEAIKRQAMMNEKLAEMKPLKLMTNGILEAKHMAAHAAHFKKEPLMDLGCLS 227
            :.|.|..      .:::..:.:::...:....:..:||                |..|.:.. ..
  Rat   172 RSVERASTPYSIDSDSLGMECIISGSASPTLAINTVTN----------------KVTLYNTD-QD 219

  Fly   228 GKEVSHAAMLNSCHD-SLAQMNHLAGGGV-------EHPGFTVDSLMNVYNPR------------ 272
            |.:...:::.||..| |||.:|..:.|.|       .||.....||.....|:            
  Rat   220 GSDSPRSSLNNSLSDQSLASVNLNSVGSVHSYTPVTNHPEPVSQSLTPQQQPQYNLPERDKQLLF 284

  Fly   273 --------------IHHSAYPYHLNEDNLATVASSQMHHVHHAAAAHHAQQ----LQRHVAHVAH 319
                          ::.|.:...|::..|.::.|......|.:.:..|:..    ...|....:.
  Rat   285 TEYNFEDLSASFRSLYKSVFEQSLSQQGLMSIPSESSQQSHTSCSYQHSPSSTVTSHPHSNQSSL 349

  Fly   320 PLTPGGQGAGGQSS------GH-------SPTTISTPHG-PAHGGWYTPETPPSEP-------VP 363
            |....|..|.|.:|      .|       ||.|...||| |.|.  ..|:.|.|.|       .|
  Rat   350 PNNHSGLSATGSNSVAQVSLSHPQMHTQPSPHTPHRPHGLPQHP--QRPQHPASHPQQHSQLQPP 412

  Fly   364 HNGQQGTPTHPGHNNNNSSSVLNH 387
            |:.......|..|:.|:....|.|
  Rat   413 HSQHPPPHQHIQHHPNHQHQTLAH 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crocNP_524202.1 FH_FOX 69..159 CDD:469596 48/94 (51%)
Foxj3NP_001101441.1 COG5025 <54..345 CDD:227358 80/312 (26%)
FH_FOXJ3 77..155 CDD:410826 47/77 (61%)

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