DRSC/TRiP Functional Genomics Resources

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Protein Alignment croc and pha-4

DIOPT Version :10

Sequence 1:NP_524202.1 Gene:croc / 40374 FlyBaseID:FBgn0014143 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_001041114.1 Gene:pha-4 / 180357 WormBaseID:WBGene00004013 Length:506 Species:Caenorhabditis elegans


Alignment Length:339 Identity:113/339 - (33%)
Similarity:159/339 - (46%) Gaps:80/339 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 AQTAA---GYGSASAVAAASS--ASAAAAAHYAYDQYSRYPYSASAYGLGAPHQNKEIV------ 69
            |.|||   ...|||||...|:  :|:..||..|...||..   :...|.....|..|.|      
 Worm   167 ATTAAASVATSSASAVIGRSNGRSSSTVAASPADRSYSGV---SGGQGQELTIQEFETVTEKIRR 228

  Fly    70 -------KPPYSYIALIAMAIQNAADKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNEC 127
                   |||||||:||.||||.:..:::||:.||.:||:.||||::|:|.|||||||:||.|:|
 Worm   229 HGTYGQSKPPYSYISLITMAIQKSNSRQLTLSEIYNWIMDLFPYYQNNQQRWQNSIRHSLSFNDC 293

  Fly   128 FVKVARDDKKPGKGSYWTLDPDSYNMFDNGSFLRRRRRF--KKKDVMREKEEAIKRQAMMNEKLA 190
            ||||||...||||||:|||.....|||:||.:|||::||  |:::..|:|..|..:|....:.:.
 Worm   294 FVKVARSPDKPGKGSFWTLHEHCGNMFENGCYLRRQKRFKVKEREPSRKKRNANSQQLHQQQHIP 358

  Fly   191 EMK-----PLKLMTNGILEAKHMAAHAAHFK--KEPL----------MDLGCL--SG--KEVSHA 234
            :|:     |..:.|...|.|..:....:..|  ||.|          .:||.:  ||  ..|:|:
 Worm   359 KMEIKEEDPTSITTTSSLGAYSLIPQISTKKEIKEELKAVQDATAAAANLGLIDPSGTPSAVNHS 423

  Fly   235 ------AMLNSCHDSLAQM----------------------------NHLAGGGVEHPGFTVDSL 265
                  :.:.:...:.|||                            |.|......:||  :|..
 Worm   424 QPTSVISSVGTLGTTQAQMTLNGQYASPYLYSSDFATILPQSQNFLNNTLYNTTSSYPG--IDYT 486

  Fly   266 MNVYNPRIHHSAYP 279
            ..||...::.|..|
 Worm   487 NGVYQNTLYSSTNP 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crocNP_524202.1 FH_FOX 69..159 CDD:469596 57/102 (56%)
pha-4NP_001041114.1 FH_FOXA 236..332 CDD:410789 59/95 (62%)

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