DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment croc and Foxd1

DIOPT Version :9

Sequence 1:NP_524202.1 Gene:croc / 40374 FlyBaseID:FBgn0014143 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_032268.2 Gene:Foxd1 / 15229 MGIID:1347463 Length:456 Species:Mus musculus


Alignment Length:512 Identity:145/512 - (28%)
Similarity:194/512 - (37%) Gaps:189/512 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 GYGSASAVAAASSASAAAAAHYAYDQYSRYPYSASAYGLGAPHQNKEIVKPPYSYIALIAMAIQN 85
            |.|..|...|...|.....|                 |.|...:| .:|||||||||||.|||..
Mouse    99 GSGGCSGAGAGGGAGGGTGA-----------------GTGGGAKN-PLVKPPYSYIALITMAILQ 145

  Fly    86 AADKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFVKVARDDKKPGKGSYWTLDPDS 150
            :..|::||:.|.::|..||||||:....||||||||||||:||||:.|:...||||:||||||:|
Mouse   146 SPKKRLTLSEICEFISSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPES 210

  Fly   151 YNMFDNGSFLRRRRRFKKKDVMREKEEAIKRQAMMNEKLAEMKPLKLMTNGILEAKHMAAH---- 211
            .:|||||||||||:|||::.::                                |.|.||.    
Mouse   211 ADMFDNGSFLRRRKRFKRQPLL--------------------------------APHAAAEALLL 243

  Fly   212 -------------AAHFKKEP------LMDLGCLSGKEVSHAAMLNSCHDSLAQMNHLAGGGVEH 257
                         ||.|...|      ....||..|.::...|..::...:.|    .|.....|
Mouse   244 RGAGPAAGAGDPGAALFPPPPPPPACGYGAYGCAYGLQLPPCAPPSALFAAAA----AAAAAAFH 304

  Fly   258 PGFTVDSLMNVYNPRIHHS----AYPYHLNEDNLATVASSQMHHVHHAAAAHHAQQLQRHVAHVA 318
            |                ||    ..|........|.:|.:...:..||.||.....||      |
Mouse   305 P----------------HSPPPPPPPPPPPPGAAAELARTAFGYRSHALAAALPGPLQ------A 347

  Fly   319 HPLTPGGQGAGGQSSGHSPTTIST----PHGPAHGGWYTPETPPSEPVPHNGQQGTPTHPGHNNN 379
            ..:..||.||.  :...||.:|.:    ..|||..|.:.                          
Mouse   348 AAVKAGGPGAA--ALARSPFSIESLIGRTRGPAAAGAHV-------------------------- 384

  Fly   380 NSSSVLNHNGVGNGGGGGGGGGGGSSSVLTSSPTSALGFRDMIFEQNQSCQLDTGSPTGSLQSAS 444
                   .:|..:|...|.||||                          |         ::|:|:
Mouse   385 -------SSGAASGTAPGPGGGG--------------------------C---------AVQAAA 407

  Fly   445 PPASA---SVAAASAAAAAAVISSHHHHHHHHAALSGNLGQLGQLSNLSHYRPHVGH 498
            .||.|   |:..|:||||::|.||        ||| |.|.|...||::.::...:.:
Mouse   408 GPAVALTRSLVVAAAAAASSVSSS--------AAL-GTLHQGTALSSVENFTARISN 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
crocNP_524202.1 Forkhead 70..156 CDD:278670 54/85 (64%)
Foxd1NP_032268.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..104 2/4 (50%)
Forkhead 130..216 CDD:278670 54/85 (64%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 303..322 5/34 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 381..401 8/78 (10%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2294
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1270467at2759
OrthoFinder 1 1.000 - - FOG0000010
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

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