DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Aef1 and AT3G29340

DIOPT Version :9

Sequence 1:NP_001262157.1 Gene:Aef1 / 40370 FlyBaseID:FBgn0005694 Length:454 Species:Drosophila melanogaster
Sequence 2:NP_189580.1 Gene:AT3G29340 / 822592 AraportID:AT3G29340 Length:650 Species:Arabidopsis thaliana


Alignment Length:192 Identity:40/192 - (20%)
Similarity:55/192 - (28%) Gaps:71/192 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 CTVCDRRFRQLSTLTNHVKIH---------------------------TGEKPYKCNVCDKTFRQ 223
            |.:|.:.|.....|..|.:||                           :....|:|.||.|.|..
plant    45 CKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSCYECKVCGKIFGC 109

  Fly   224 SSTLTNHLKIHTG-----------------------------------EKPYNCNFCPKHFRQ-- 251
            ...|..|.|:|..                                   ||..:|....:.|.:  
plant   110 YRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEKFLHCVELKQDFSEPL 174

  Fly   252 ------LSTLANHVKIHTGEK-PFECVICKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEED 306
                  .|||.:.::..|..| ...|.||.|.|..|..|.||.::|......:..|.|..||
plant   175 SHSGALPSTLRSKLQTKTQWKSSCHCKICGKSFVCSQGLGNHKRVHREISGKLACKRKYTED 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Aef1NP_001262157.1 C2H2 Zn finger 186..206 CDD:275368 5/19 (26%)
zf-H2C2_2 199..223 CDD:290200 10/50 (20%)
C2H2 Zn finger 214..234 CDD:275368 8/19 (42%)
zf-H2C2_2 227..251 CDD:290200 8/58 (14%)
C2H2 Zn finger 242..262 CDD:275368 5/27 (19%)
zf-H2C2_2 255..279 CDD:290200 8/24 (33%)
C2H2 Zn finger 270..290 CDD:275368 9/19 (47%)
AT3G29340NP_189580.1 zf-C2H2_6 43..68 CDD:290623 7/22 (32%)
C2H2 Zn finger 45..65 CDD:275368 5/19 (26%)
C2H2 Zn finger 100..120 CDD:275368 8/19 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 42 1.000 Inparanoid score I2696
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

Return to query results.
Submit another query.