DRSC/TRiP Functional Genomics Resources

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Protein Alignment barc and htatsf1

DIOPT Version :10

Sequence 1:NP_649313.1 Gene:barc / 40369 FlyBaseID:FBgn0037081 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_957497.2 Gene:htatsf1 / 394178 ZFINID:ZDB-GENE-040426-1578 Length:450 Species:Danio rerio


Alignment Length:439 Identity:178/439 - (40%)
Similarity:258/439 - (58%) Gaps:47/439 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 DVDGQAEDPYENEHYKWCPKSQQWLPKKQETETEHYKWDDEQKKWVPKHPNPGQEGVCGVDEHGE 176
            |.||       |:.:....:.||...::||...:.|                             
Zfish     4 DSDG-------NKEFHEQLRLQQLYEQRQENSDDPY----------------------------- 32

  Fly   177 RTYTD-KDGVEFFWDATKSAWFPKIDDDFMARYQMNYGFIDNTSAGEKEKAEKEAAEAKRKEEEL 240
             |||| :||..:.||..|.||||||:|||:|.||.|||| :...|.:...|...|.....|.||.
Zfish    33 -TYTDPEDGTVYDWDHEKRAWFPKINDDFIAAYQANYGF-NEEGAPDPSAAVNSAESLPAKSEEP 95

  Fly   241 KRMTAEAEAAMSRDNPASSAAVPTG-KRKAQEPPKWFEMDPLQNTKVYVSNLPLDITMDEFADLM 304
            |:.....:.|.:.|...:......| ||||.  |.|||::..:||.|||:.||.|||.|||.::|
Zfish    96 KKPEEPTKPAEASDQGKNKEGEKKGEKRKAD--PTWFEVEKEKNTNVYVTGLPPDITPDEFVEVM 158

  Fly   305 GKCGMVMRDPQTQKFKLKLYAEKDGQIKGDGLCDYIKVESVNLALKILDEYNLRGHKIRVQRAQF 369
            .|||:|||||.|:::|:|:|.:|||..||||||.|:|.|||.||.::|||..:||:::.|:.|:|
Zfish   159 SKCGIVMRDPITEEYKIKIYKDKDGNQKGDGLCCYLKKESVALAKQLLDETEIRGYRLHVEEARF 223

  Fly   370 QMRGEYNPALKPKRKKKDKEKLQKMKEKLFDWRPDKLRGERSKNEKTVIIKNLFTPELFEKEVEL 434
            :::|:::.:.|.|:.|:.::|||:.:::| ||||:|....|.::||.:||:|:|.|..||::..:
Zfish   224 ELKGQFDASKKKKKNKEYRKKLQQQQKQL-DWRPEKSGEVRKRHEKVIIIQNMFHPTDFEEDPLV 287

  Fly   435 ILEYQNNLREECSKCGMVRKVVIYDRHPDGVAQINMASPEEADLVIQMMQGRYFGQRQLSAEAWD 499
            :.||:::||.||.|.|.|:||:|:||||||||.:....|||||.....:.||:||.|:|||..||
Zfish   288 LNEYRDDLRTECEKFGQVKKVIIFDRHPDGVASVAFKEPEEADACQVALNGRWFGGRKLSALLWD 352

  Fly   500 GKTKYKIEESAVEAHERLSKWDEFLAEEETDKKASEDMKEEDVDSPENQ 548
            |.|.|::||::.|..|||..|..||.    |:|.|.:.|.....:.|.|
Zfish   353 GVTDYQVEETSREREERLKGWSSFLG----DEKGSGEAKANSTKTDEQQ 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
barcNP_649313.1 RRM1_TatSF1_like 283..373 CDD:409723 50/89 (56%)
RRM2_TatSF1_like 414..504 CDD:409724 46/89 (52%)
htatsf1NP_957497.2 None

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