DRSC/TRiP Functional Genomics Resources

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Protein Alignment barc and Htatsf1

DIOPT Version :10

Sequence 1:NP_649313.1 Gene:barc / 40369 FlyBaseID:FBgn0037081 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_001101729.1 Gene:Htatsf1 / 317612 RGDID:1563377 Length:776 Species:Rattus norvegicus


Alignment Length:391 Identity:172/391 - (43%)
Similarity:245/391 - (62%) Gaps:33/391 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 DEQKKWVPKHPNPGQEGVCGVDEHGERTYTDK-----DGVEFFWDATKSAWFPKIDDDFMARYQM 210
            |||.:....:.:| :||....:..||   ||.     |...:.||..|.||||||.:||:|.||.
  Rat    13 DEQLRMQELYGDP-KEGDTQNEPSGE---TDSLGQPPDDTPYEWDLDKKAWFPKITEDFIASYQA 73

  Fly   211 NYGFIDN---TSAGEKEKAEKEAAEAKRKEEELKRMTAEAEAAMSRDNPASSAAVPTG-KRKAQE 271
            ||||..:   :|.|..:.|.                |...|....::.|.::.:...| ||||:.
  Rat    74 NYGFSGDGAPSSTGNVQDAN----------------TKTVEEPPQKEIPETTDSKKRGEKRKAES 122

  Fly   272 PPKWFEMDPLQNTKVYVSNLPLDITMDEFADLMGKCGMVMRDPQTQKFKLKLYAEKDGQIKGDGL 336
              .||.::..:||.||||.||.|||:|||..||.|.|::||||||::||:|||.:..|.:|||||
  Rat   123 --GWFHVEEDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDDQGNLKGDGL 185

  Fly   337 CDYIKVESVNLALKILDEYNLRGHKIRVQRAQFQMRGEYNPALKPKRKKKDKEKLQKMKEKLFDW 401
            |.|:|.|||.||||:|||..:||:|:.|:.||||::|||: |.|.|:|.||.:|...:::|..||
  Rat   186 CCYLKKESVELALKLLDEDEIRGYKLHVEVAQFQLKGEYD-ASKKKKKCKDYKKKLSLQQKQLDW 249

  Fly   402 RPDKLRG-ERSKNEKTVIIKNLFTPELFEKEVELILEYQNNLREECSKCGMVRKVVIYDRHPDGV 465
            ||::..| .|.::|:.||:||:|.|..||.:..::.|.:.:||.||||.|.:||::::|||||||
  Rat   250 RPERRAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGV 314

  Fly   466 AQINMASPEEADLVIQMMQGRYFGQRQLSAEAWDGKTKYKIEESAVEAHERLSKWDEFLAEEETD 530
            |.::...|||||..||.:.||:||.||::|:||||.|.|::||::.|..|||..|:.||...|.:
  Rat   315 ASVSFREPEEADNCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSREREERLRGWEAFLNAPEAN 379

  Fly   531 K 531
            :
  Rat   380 R 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
barcNP_649313.1 RRM1_TatSF1_like 283..373 CDD:409723 56/89 (63%)
RRM2_TatSF1_like 414..504 CDD:409724 46/89 (52%)
Htatsf1NP_001101729.1 RRM1_TatSF1_like 132..222 CDD:409723 56/89 (63%)
RRM2_TatSF1_like 263..353 CDD:409724 46/89 (52%)
2A1904 <412..623 CDD:273344
Blue background indicates that the domain is not in the aligned region.

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