DRSC/TRiP Functional Genomics Resources

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Protein Alignment rgn and Clec2h

DIOPT Version :10

Sequence 1:NP_001246866.1 Gene:rgn / 40368 FlyBaseID:FBgn0261258 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_444395.2 Gene:Clec2h / 94071 MGIID:2136934 Length:218 Species:Mus musculus


Alignment Length:137 Identity:29/137 - (21%)
Similarity:49/137 - (35%) Gaps:23/137 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KMWCCQVFILALFAHTIAVEFHGSAARAEINFEGPSPAHSQDTAAPTSRPKRRVYALCPPKFHRV 70
            |::||...|:.|....||:                |.|.|.....|....:...|..||..:...
Mouse    49 KLYCCYGVIMVLTVAVIAL----------------SVALSVRNKIPAMEDREPCYTACPSGWIGF 97

  Fly    71 GTDCYSLVDQRSSWLEAHFFCKDKNANLTEPGKHADRKLRLFLQKQDALSGENDPIWLGATYDHH 135
            |:.|:...:...:|..:...|...|::|..  .|:..:|. ||::....|..    |:|......
Mouse    98 GSKCFYFSEDMGNWTFSQSSCVASNSHLAL--FHSLEELN-FLKRYKGTSDH----WIGLHRAST 155

  Fly   136 NNRWQWS 142
            .:.|.|:
Mouse   156 QHPWIWT 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgnNP_001246866.1 CLECT 74..200 CDD:153057 14/69 (20%)
Smc <405..>673 CDD:440809
CCDC47 <732..783 CDD:480722
Clec2hNP_444395.2 PHA02642 40..202 CDD:165024 29/137 (21%)
Blue background indicates that the domain is not in the aligned region.

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