DRSC/TRiP Functional Genomics Resources

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Protein Alignment rgn and LOC690020

DIOPT Version :9

Sequence 1:NP_001246866.1 Gene:rgn / 40368 FlyBaseID:FBgn0261258 Length:808 Species:Drosophila melanogaster
Sequence 2:XP_001072955.4 Gene:LOC690020 / 690020 RGDID:1585190 Length:320 Species:Rattus norvegicus


Alignment Length:155 Identity:36/155 - (23%)
Similarity:56/155 - (36%) Gaps:41/155 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 VYALCPPKFHRVGTDCYSLVDQRSSWLEAHFFCKDKNANLTEPGKHADRKLRLFLQKQDALSGEN 123
            |:..|      .|..||..:..:..|.|....|:....:|.......:.|   |||    |....
  Rat   193 VHLFC------CGIKCYYFIMDKKQWKECEQACQGCKLSLLTIDDEDELK---FLQ----LQVTP 244

  Fly   124 DPIWLGATYDH--HNNRW-QWSMSGRNLSTDSFSRTDSAYVQL----ISNSQPLDNNCAIYDPSL 181
            |..|:|.:||:  |::.| ..:.|...|:...:...|..:|.|    :.||:             
  Rat   245 DSYWIGLSYDNKKHDSAWIDNNPSKFALNIKKYYVKDENFVFLSKTRLGNSK------------- 296

  Fly   182 KYRWSARPCSDKLRFICQHKMPKVS 206
              |.|..||      ||:.::.|.|
  Rat   297 --RESVYPC------ICEKRLDKSS 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgnNP_001246866.1 CLECT 74..200 CDD:153057 31/132 (23%)
GBP_C <414..508 CDD:303769
TPH 421..756 CDD:290579
coiled coil 483..494 CDD:293879
LOC690020XP_001072955.4 Ly49 86..205 CDD:285577 5/17 (29%)
CLECT_NK_receptors_like 194..307 CDD:153063 33/146 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345267
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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