DRSC/TRiP Functional Genomics Resources

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Protein Alignment rgn and Klrb1

DIOPT Version :9

Sequence 1:NP_001246866.1 Gene:rgn / 40368 FlyBaseID:FBgn0261258 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_001078874.1 Gene:Klrb1 / 689817 RGDID:1587563 Length:214 Species:Rattus norvegicus


Alignment Length:196 Identity:46/196 - (23%)
Similarity:76/196 - (38%) Gaps:26/196 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 CQVFILALFAHTIAVEFHGSAARAEINFEGPSPAHSQDTAAPTSRPKRRVYALCPPKFHRVGTDC 74
            |...||.|...::.|.|  ...:..|  |..|.|..::...||   .|.....||..:|.....|
  Rat    45 CVGLILLLMGLSVLVGF--LVQKPPI--EKCSVAVQENKTEPT---VRSTILECPRDWHLHWNKC 102

  Fly    75 YSLVDQRSSWLEAHFFCKDKNANLTEPGKHADRKLRLFLQKQDALSGENDPIWLGATYDHHNNRW 139
            ..:......|.|....|..:.|.|...|...:.||     .||...|:....::|..|...:..|
  Rat   103 LFISQTSRPWAEGLADCSLRGATLLLIGDGKELKL-----LQDFSKGKGQQFFIGLKYVQEDKVW 162

  Fly   140 QWSMSGRNLSTDSFSRTDSAYVQLISNSQPLDNNCAIYDPSLKYRWSARPCSDKLRFICQHKMPK 204
            :| |:|..|:|:        .:::...::  :|:||:...:..:..|   ||....:|||..:.:
  Rat   163 KW-MNGSILNTN--------LLRITGKNE--ENSCALISHTEVFSDS---CSSDNHWICQKTLKR 213

  Fly   205 V 205
            |
  Rat   214 V 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgnNP_001246866.1 CLECT 74..200 CDD:153057 28/125 (22%)
GBP_C <414..508 CDD:303769
TPH 421..756 CDD:290579
coiled coil 483..494 CDD:293879
Klrb1NP_001078874.1 Neurensin 20..>69 CDD:291588 7/27 (26%)
CLECT_NK_receptors_like 91..209 CDD:153063 31/136 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345312
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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