DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rgn and si:dkey-241l7.5

DIOPT Version :10

Sequence 1:NP_001246866.1 Gene:rgn / 40368 FlyBaseID:FBgn0261258 Length:808 Species:Drosophila melanogaster
Sequence 2:XP_068071615.1 Gene:si:dkey-241l7.5 / 565442 ZFINID:ZDB-GENE-041014-237 Length:157 Species:Danio rerio


Alignment Length:142 Identity:25/142 - (17%)
Similarity:55/142 - (38%) Gaps:17/142 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 CPPKFHRVGTDCYSLVDQRSSWLEAHFFCKDKNANLTEPGKHADRKLRLFLQKQDALSGENDPIW 127
            |...:.|.|:.|:....:..:|:.|...|:....||.......:....|      :|...:...|
Zfish    31 CERGWSRSGSRCFRFFSRSVNWVTAERNCQSLGGNLASVHDQVENDFLL------SLVPGSTRCW 89

  Fly   128 LGATYDHHNNRWQWSMSGRNLSTDSFSRTDSAYVQLISNSQPLDNNCAIYDPSLKYRWSARPCSD 192
            :|......:.:|.||      ....:..|:....:..|.|:    :|...:.:..:.|:.:.||.
Zfish    90 IGGHDGEQDGQWLWS------DGSVYGYTNWCSGEPSSGSE----HCLEINWTSNHCWNNQGCST 144

  Fly   193 KLRFIC-QHKMP 203
            ::.::| :.::|
Zfish   145 RMGYLCAKRRVP 156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgnNP_001246866.1 CLECT 74..200 CDD:153057 21/126 (17%)
Smc <405..>673 CDD:440809
CCDC47 <732..783 CDD:480722
si:dkey-241l7.5XP_068071615.1 CLECT 31..150 CDD:214480 23/134 (17%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.