DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rgn and si:dkey-83f18.5

DIOPT Version :9

Sequence 1:NP_001246866.1 Gene:rgn / 40368 FlyBaseID:FBgn0261258 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_001093472.1 Gene:si:dkey-83f18.5 / 561255 ZFINID:ZDB-GENE-070705-504 Length:360 Species:Danio rerio


Alignment Length:183 Identity:43/183 - (23%)
Similarity:74/183 - (40%) Gaps:29/183 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 CYSL------VDQRSSWLEAHFFCKDKNANLTE-PGKHADRKLRLFLQ-KQDALSGENDPIWLGA 130
            ||::      |||:.:|..|..:|:..:.:|.. ..::.:::|..|:. |..:.||    ||:|.
Zfish   122 CYNMSRGLVFVDQKMNWTAAQSYCRQNHIDLVSVRNQNENQQLEKFINVKNPSGSG----IWIGL 182

  Fly   131 TYDHHNNRWQWSMSGRNLSTDSFSRTDSAYVQLISNSQPLDNNCAIYDPSLKYRWSARPCSDKLR 195
            ..|    .||||    :.|..|||..::..    .|:...:.||.:...:....|:...|..:..
Zfish   183 FRD----SWQWS----DQSNYSFSYWNTGE----PNNSGNNENCTVLLENTHGHWADISCDRQFP 235

  Fly   196 FICQHKMPKVSGPNRYKIYNRWNATYPNEQANEVVLEILEPRENDRRYHRRVK 248
            |:|......|...|.     .|:......:.:.|.|..::..|..||....||
Zfish   236 FVCHEDKLIVIQQNL-----SWSEALRYCRQHHVDLVSVQSVEMQRRVMNVVK 283

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgnNP_001246866.1 CLECT 74..200 CDD:153057 33/133 (25%)
GBP_C <414..508 CDD:303769
TPH 421..756 CDD:290579
coiled coil 483..494 CDD:293879
si:dkey-83f18.5NP_001093472.1 CLECT 23..124 CDD:295302 1/1 (100%)
CLECT_1 127..239 CDD:153072 30/127 (24%)
CLECT 245..357 CDD:153057 10/44 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.