DRSC/TRiP Functional Genomics Resources

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Protein Alignment rgn and si:ch211-225k7.6

DIOPT Version :9

Sequence 1:NP_001246866.1 Gene:rgn / 40368 FlyBaseID:FBgn0261258 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_001093462.1 Gene:si:ch211-225k7.6 / 558654 ZFINID:ZDB-GENE-070705-121 Length:359 Species:Danio rerio


Alignment Length:132 Identity:30/132 - (22%)
Similarity:58/132 - (43%) Gaps:23/132 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 CYSL------VDQRSSWLEAHFFCKDKNANLTE-PGKHADRKLRLFLQKQDALSGENDPIWLGAT 131
            ||::      |:|..:|..|..:|:..:.:|.. ..::..::|..|:  .|::...:| :|:|..
Zfish   122 CYNMSRGLVFVNQTMNWRAAQSYCRQNHIDLVSVRNQNESQQLEKFI--NDSIPSRSD-VWIGLF 183

  Fly   132 YDHHNNRWQWSMSGRNLSTDSFSRTDSAYVQLISNSQPLDNNCAIYDPSLKYRWSARPCSDKLRF 196
            .|     ||||    :.|..|||..::.......|::    ||.:...:....|:...|..:..|
Zfish   184 RD-----WQWS----DQSNYSFSYWNTNEPNNYGNNE----NCTVLKENTNGHWADISCDCQFPF 235

  Fly   197 IC 198
            :|
Zfish   236 VC 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgnNP_001246866.1 CLECT 74..200 CDD:153057 30/132 (23%)
GBP_C <414..508 CDD:303769
TPH 421..756 CDD:290579
coiled coil 483..494 CDD:293879
si:ch211-225k7.6NP_001093462.1 CLECT 23..124 CDD:295302 1/1 (100%)
CLECT 127..238 CDD:295302 28/127 (22%)
CLECT 244..356 CDD:153057
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
00.000

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