DRSC/TRiP Functional Genomics Resources

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Protein Alignment rgn and si:dkey-88n24.8

DIOPT Version :9

Sequence 1:NP_001246866.1 Gene:rgn / 40368 FlyBaseID:FBgn0261258 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_001025264.1 Gene:si:dkey-88n24.8 / 555745 ZFINID:ZDB-GENE-041014-92 Length:314 Species:Danio rerio


Alignment Length:187 Identity:42/187 - (22%)
Similarity:78/187 - (41%) Gaps:27/187 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 CYSL------VDQRSSWLEAHFFCKDKNANLTE-PGKHADRKLRLFLQKQDALSGENDPIWLGAT 131
            ||::      |:|..:|.:|..:|:..:.:|.. ..::.:::|..|:..::: ||  ..:|:|..
Zfish    76 CYNMSTGLVFVNQMMNWRDAQSYCRQNHTDLVSVRNQNENQQLEKFIHDRNS-SG--SAVWIGLF 137

  Fly   132 YDHHNNRWQWSMSGRNLSTDSFSRTDSAYVQLISNSQPLDNNCAIYDPSLKYRWSARPCSDKLRF 196
            .|    .||||    :.|..||...|:    :..|:.....:|.:.:...:.||:..||.....|
Zfish   138 RD----TWQWS----DQSNSSFRYWDT----IEPNNDKGCEDCTVINKYAQRRWNDIPCGLTFSF 190

  Fly   197 ICQHKMPKVSGPNRYKIYNRWNATYPNEQANEVVLEILEPRENDRRYHRRVKAEDSD 253
            :|......|...|.     .|:......:.|.|.|..::..|..||....||...::
Zfish   191 VCHEDKLIVIQQNL-----SWSEALRYCRQNHVDLVSVQSVEMQRRVMNVVKLASTE 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgnNP_001246866.1 CLECT 74..200 CDD:153057 31/132 (23%)
GBP_C <414..508 CDD:303769
TPH 421..756 CDD:290579
coiled coil 483..494 CDD:293879
si:dkey-88n24.8NP_001025264.1 CLECT <1..78 CDD:321932 1/1 (100%)
CLECT_1 83..193 CDD:153072 28/124 (23%)
CLECT 199..311 CDD:153057 11/49 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
00.000

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