DRSC/TRiP Functional Genomics Resources

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Protein Alignment rgn and Clec7a

DIOPT Version :10

Sequence 1:NP_001246866.1 Gene:rgn / 40368 FlyBaseID:FBgn0261258 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_001166857.1 Gene:Clec7a / 502902 RGDID:1565140 Length:235 Species:Rattus norvegicus


Alignment Length:168 Identity:36/168 - (21%)
Similarity:60/168 - (35%) Gaps:27/168 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 EGPSPAHSQDTAAPTSRPKRRVYALCPPKFHRVGTDCYSLVDQRSSWLEAHFFCKDKNANLTEPG 102
            |..:|:.:..|....|.|       |.|.:......||......:||..:...|....|:|.   
  Rat    92 EKVAPSKASQTTGVFSGP-------CLPNWIMHAKSCYLFSFSENSWYGSRRHCSQLGAHLL--- 146

  Fly   103 KHADRKLRLFLQKQDALSGENDPIWLGATYDHHNNRWQWSMSGRNLSTDSFSRTDSAYVQLISNS 167
            |..:.|...|::.|.: |...:..|:|.:.:.....|.|. .|...:.:||.         :.|:
  Rat   147 KIDNAKEFEFIESQTS-SHRVNSFWIGLSRNQSEGPWFWE-DGSAFTPNSFQ---------VRNT 200

  Fly   168 QP---LDNNCAIYDPSLKYRWSARPCSDKLRFICQHKM 202
            .|   |.:||.....|..|.   :.|......||:.::
  Rat   201 APQESLPHNCVWIHGSEVYN---QMCIASSFTICEKEL 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgnNP_001246866.1 CLECT 74..200 CDD:153057 29/128 (23%)
Smc <405..>673 CDD:440809
CCDC47 <732..783 CDD:480722
Clec7aNP_001166857.1 Ly49 34..>63 CDD:462461
CLECT_NK_receptors_like 110..233 CDD:153063 31/139 (22%)
Blue background indicates that the domain is not in the aligned region.

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