DRSC/TRiP Functional Genomics Resources

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Protein Alignment rgn and Ly49si3

DIOPT Version :10

Sequence 1:NP_001246866.1 Gene:rgn / 40368 FlyBaseID:FBgn0261258 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_001009919.1 Gene:Ly49si3 / 494209 RGDID:1359669 Length:267 Species:Rattus norvegicus


Alignment Length:160 Identity:34/160 - (21%)
Similarity:61/160 - (38%) Gaps:30/160 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 TAAPTSRPKRR---VYALCPPKFHRVGTDCYSLVDQRSSWLEAHFFCKDKNANLTEPGKHADRKL 109
            |..|:|:...:   :|..|      .|..||..:..:.:|:.....|:....:|.:.....:.| 
  Rat   132 TVIPSSQHTGKNVEIYWFC------YGIKCYYFILDKKTWIRCQQACQKSRLSLLKIDDEDELK- 189

  Fly   110 RLFLQKQDALSGENDPIWLGATYDHHNNRWQWSMSGRNLSTDSFSRTDSAYVQLISNSQPLDNNC 174
              |||.| .||   |..|:|.:|:.....|.|..:|::..:.:..:.:..|...:..||....|.
  Rat   190 --FLQLQ-VLS---DQYWIGLSYNKAKEEWSWIDNGQSEFSLNLKKYNEKYGGCMFLSQTRLENA 248

  Fly   175 AIYDPSLKYRWSARPCSDKLRFICQHKMPK 204
            .              |.::...|||.::.|
  Rat   249 M--------------CMNRYPCICQKRLEK 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgnNP_001246866.1 CLECT 74..200 CDD:153057 26/125 (21%)
Smc <405..>673 CDD:440809
CCDC47 <732..783 CDD:480722
Ly49si3NP_001009919.1 Ly49 40..158 CDD:462461 8/31 (26%)
CLECT_NK_receptors_like 145..260 CDD:153063 29/141 (21%)
Blue background indicates that the domain is not in the aligned region.

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