DRSC/TRiP Functional Genomics Resources

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Protein Alignment rgn and Ly49si2

DIOPT Version :9

Sequence 1:NP_001246866.1 Gene:rgn / 40368 FlyBaseID:FBgn0261258 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_001009498.1 Gene:Ly49si2 / 494207 RGDID:1359240 Length:267 Species:Rattus norvegicus


Alignment Length:146 Identity:31/146 - (21%)
Similarity:55/146 - (37%) Gaps:27/146 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 VYALCPPKFHRVGTDCYSLVDQRSSWLEAHFFCKDKNANLTEPGKHADRKLRLFLQKQDALSGEN 123
            :|..|      .|..||..:..:.:|:.....|:....:|.:.....:.|   |||.| .||   
  Rat   146 IYWFC------YGIKCYYFILDKKTWIRCQQACQKSRLSLLKIDDEDELK---FLQLQ-VLS--- 197

  Fly   124 DPIWLGATYDHHNNRWQWSMSGRNLSTDSFSRTDSAYVQLISNSQPLDNNCAIYDPSLKYRWSAR 188
            |..|:|.:|:.....|.|..:|::..:.:..:.:..|...:..||....|..             
  Rat   198 DQYWIGLSYNKAKEEWSWIDNGQSEFSLNLKKYNEKYGGCMFLSQTRLENAM------------- 249

  Fly   189 PCSDKLRFICQHKMPK 204
             |.::...|||.::.|
  Rat   250 -CMNRYPCICQKRLEK 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgnNP_001246866.1 CLECT 74..200 CDD:153057 26/125 (21%)
GBP_C <414..508 CDD:303769
TPH 421..756 CDD:290579
coiled coil 483..494 CDD:293879
Ly49si2NP_001009498.1 Ly49 40..158 CDD:400616 5/17 (29%)
CLECT_NK_receptors_like 145..260 CDD:153063 29/140 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345273
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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