DRSC/TRiP Functional Genomics Resources

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Protein Alignment rgn and CLEC2D

DIOPT Version :9

Sequence 1:NP_001246866.1 Gene:rgn / 40368 FlyBaseID:FBgn0261258 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_001004419.1 Gene:CLEC2D / 29121 HGNCID:14351 Length:194 Species:Homo sapiens


Alignment Length:193 Identity:41/193 - (21%)
Similarity:72/193 - (37%) Gaps:45/193 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 MWCCQVFILALFAHTIAVEFHG--SAARAEINFEGPSPAHSQDTAAPTSRPKRRVYALCPPKFHR 69
            :|  ::|.|.:|...|......  ||.||..:.|                |...:.|.||..:..
Human    35 IW--RLFFLIMFLTIIVCGMVAALSAIRANCHQE----------------PSVCLQAACPESWIG 81

  Fly    70 VGTDCYSLVDQRSSWLEAHFFCKDKNANLTEPGKHADRKLRLFLQKQDALSGENDPIWLGATYDH 134
            ....|:...|...:|..:..||..::|:|.:  ..:.::|...|:    ..|.:|. |:|.:.: 
Human    82 FQRKCFYFSDDTKNWTSSQRFCDSQDADLAQ--VESFQELNFLLR----YKGPSDH-WIGLSRE- 138

  Fly   135 HNNRWQWSMSGRNLSTDSFSRTDSA--YVQLIS-----NSQPLDNNCAIYDPSLKYRWSARPC 190
            ....|:| ::|...:.....:.|.|  ||..:|     |.:|:         .:.|..|.|.|
Human   139 QGQPWKW-INGTEWTRQLVMKEDGANLYVAKVSQVPRMNPRPV---------MVSYPGSRRVC 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgnNP_001246866.1 CLECT 74..200 CDD:153057 27/124 (22%)
GBP_C <414..508 CDD:303769
TPH 421..756 CDD:290579
coiled coil 483..494 CDD:293879
CLEC2DNP_001004419.1 CLECT_NK_receptors_like 75..171 CDD:153063 22/104 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165151790
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.930

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