DRSC/TRiP Functional Genomics Resources

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Protein Alignment rgn and Clec1a

DIOPT Version :9

Sequence 1:NP_001246866.1 Gene:rgn / 40368 FlyBaseID:FBgn0261258 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_780735.2 Gene:Clec1a / 243653 MGIID:2444151 Length:269 Species:Mus musculus


Alignment Length:151 Identity:27/151 - (17%)
Similarity:52/151 - (34%) Gaps:31/151 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 CPPKFHRVGTDCYSLVDQRSSWLEAHFFCKDKNANLTEPGKHADRKLRLFLQKQ------DALSG 121
            ||.|:...|..||....:..:|....:||...||.:          |::..|::      .:.|.
Mouse   136 CPEKWKWYGDKCYQFYKESKNWQSCEYFCLADNATM----------LKISTQEELDFAMPQSYSE 190

  Fly   122 ENDPIWLGATYDHHNNRWQWSMSGRNLSTDSFSRTDSAYVQLISNSQPLDNNCAIYDPSLKYRWS 186
            .....|.|.:.:.....|.|        ||....:...:..:|..:...:.:|........|   
Mouse   191 FFYSYWTGLSRNGSGKAWLW--------TDGTPYSFELFEIIIDPTNLRNRDCMTIFNGKAY--- 244

  Fly   187 ARPCSDKLRFICQHKMPKVSG 207
            ::.|.:..|..|:    :::|
Mouse   245 SKDCKELRRCACE----RIAG 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgnNP_001246866.1 CLECT 74..200 CDD:153057 22/131 (17%)
GBP_C <414..508 CDD:303769
TPH 421..756 CDD:290579
coiled coil 483..494 CDD:293879
Clec1aNP_780735.2 CLECT_NK_receptors_like 136..258 CDD:153063 26/146 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167841897
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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