DRSC/TRiP Functional Genomics Resources

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Protein Alignment rgn and Clec12a

DIOPT Version :10

Sequence 1:NP_001246866.1 Gene:rgn / 40368 FlyBaseID:FBgn0261258 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_808354.1 Gene:Clec12a / 232413 MGIID:3040968 Length:267 Species:Mus musculus


Alignment Length:157 Identity:35/157 - (22%)
Similarity:57/157 - (36%) Gaps:50/157 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 CPPKFHRVGTDCYSLVDQRSSWLEAHFFCKDKNANLTEPGKHAD-------RKLRLFLQKQDALS 120
            ||.........|||.::|..:|.|:...|..:||:|.:. |:.|       :|||.|        
Mouse   133 CPKGSEWYKDSCYSQLNQYGTWQESVMACSARNASLLKV-KNKDVLEFIKYKKLRYF-------- 188

  Fly   121 GENDPIWLGATYDHHNNRWQWSMSGR-------NLSTDSFSRTDSAYVQLISNSQPLDNNCAIYD 178
                  ||...  ...:|.|:.:|.:       ..|||...:....|:..::          :| 
Mouse   189 ------WLALL--PRKDRTQYPLSEKMFLSEESERSTDDIDKKYCGYIDRVN----------VY- 234

  Fly   179 PSLKYRWSARPCSDKLRFICQHKMPKV 205
                |.:    |:|:...||:....||
Mouse   235 ----YTY----CTDENNIICEETASKV 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgnNP_001246866.1 CLECT 74..200 CDD:153057 31/139 (22%)
Smc <405..>673 CDD:440809
CCDC47 <732..783 CDD:480722
Clec12aNP_808354.1 ITIM motif. /evidence=ECO:0000250|UniProtKB:Q5QGZ9 5..10
CLECT_NK_receptors_like 133..247 CDD:153063 32/149 (21%)
Blue background indicates that the domain is not in the aligned region.

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