DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rgn and Klrb1f

DIOPT Version :9

Sequence 1:NP_001246866.1 Gene:rgn / 40368 FlyBaseID:FBgn0261258 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_694734.1 Gene:Klrb1f / 232408 MGIID:2442965 Length:217 Species:Mus musculus


Alignment Length:201 Identity:39/201 - (19%)
Similarity:65/201 - (32%) Gaps:52/201 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VFILALFAHTIAVEFHGSAARAEINFEGPSPAHSQDTAAPTSRPK---RRVYALCPPKFHRVGTD 73
            :.:|:|...::.|.|          .....|......||..:|.:   |.....||..:|.....
Mouse    50 LLLLSLIGLSVLVRF----------LVQKPPIEKCSVAAQENRTELTGRSAILECPRYWHPHWNK 104

  Fly    74 CYSLVDQRSSWLEAHFFCKDKNANLTEPGKHADRKLRLFLQK-------QDALSGENDPIWLGAT 131
            |..:......|.|....|..::|.|            |.::.       |:.:.|:....::|..
Mouse   105 CLFVSQISRPWAEGRDACSMEDAIL------------LLIENKEELRFVQNLIKGKEQLFFIGLK 157

  Fly   132 YDHHNNRWQW---SMSGRNLSTDSFSRTDSAYVQLISNSQPLDNNCAIYDPSLKYRWSARPCSDK 193
            |......|:|   |:...||              |....:..:|:|||...:..:..|   ||..
Mouse   158 YVQKEKIWKWIDGSILNPNL--------------LRITGKDKENSCAIISHTEVFSDS---CSSD 205

  Fly   194 LRFICQ 199
            ..:|||
Mouse   206 NHWICQ 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgnNP_001246866.1 CLECT 74..200 CDD:153057 27/136 (20%)
GBP_C <414..508 CDD:303769
TPH 421..756 CDD:290579
coiled coil 483..494 CDD:293879
Klrb1fNP_694734.1 LCK-binding motif. /evidence=ECO:0000255 31..34
CLECT_NK_receptors_like 94..212 CDD:153063 30/147 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167841915
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.