DRSC/TRiP Functional Genomics Resources

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Protein Alignment rgn and Reg2

DIOPT Version :9

Sequence 1:NP_001246866.1 Gene:rgn / 40368 FlyBaseID:FBgn0261258 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_033069.1 Gene:Reg2 / 19693 MGIID:97896 Length:173 Species:Mus musculus


Alignment Length:146 Identity:40/146 - (27%)
Similarity:64/146 - (43%) Gaps:23/146 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 CPPKFHRVGTDCYSLVDQRSSWLEAHFFCKDKNA-NLTEPGKHADRKLRLFLQKQDALSGENDPI 126
            ||...:..|:.||.|::.|.:|.||..||::.|| :|......|:......|.|:...:..|  :
Mouse    43 CPEGANAYGSYCYYLIEDRLTWGEADLFCQNMNAGHLVSILSQAESNFVASLVKESGTTASN--V 105

  Fly   127 WLGATYDHHNNRWQWSMSG-----RNLSTDSFSRTDSAY-VQLISNSQPLDNNCAIYDPSLKYRW 185
            |.|......|.||.|| ||     ::.:|.:.|..:..| |.|.||:            :.| :|
Mouse   106 WTGLHDPKSNRRWHWS-SGSLFLFKSWATGAPSTANRGYCVSLTSNT------------AYK-KW 156

  Fly   186 SARPCSDKLRFICQHK 201
            ....|..:..|:|:.:
Mouse   157 KDENCEAQYSFVCKFR 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgnNP_001246866.1 CLECT 74..200 CDD:153057 37/132 (28%)
GBP_C <414..508 CDD:303769
TPH 421..756 CDD:290579
coiled coil 483..494 CDD:293879
Reg2NP_033069.1 CLECT 43..171 CDD:295302 40/143 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5878
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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