DRSC/TRiP Functional Genomics Resources

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Protein Alignment rgn and Clec2d

DIOPT Version :10

Sequence 1:NP_001246866.1 Gene:rgn / 40368 FlyBaseID:FBgn0261258 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_569086.1 Gene:Clec2d / 113937 RGDID:620070 Length:233 Species:Rattus norvegicus


Alignment Length:141 Identity:33/141 - (23%)
Similarity:56/141 - (39%) Gaps:35/141 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 MWCCQVFIL----ALFAHTIAVEFHGSAARAEINFEGPSPAHSQDTAAPTSRPKRRVYALCPPKF 67
            ::||.|.|:    |:.|.::|:....:|..:.||                      .||.||..:
  Rat    74 LYCCYVVIIVLSVAVVALSVALSVKKTAQISTIN----------------------TYAACPRNW 116

  Fly    68 HRVGTDCYSLVDQRSSWLEAHFFCKDKNANLTEPGKHADRKLRL-FLQKQDALSGENDPIWLGAT 131
            ..||..|:...:..|:|..:...||::.|.|.    ..|.:..| ||::....||    .|.|..
  Rat   117 IGVGNKCFYFNEIPSNWTLSQTLCKEQGAELA----RFDTEEELNFLRRYKGSSG----YWFGLH 173

  Fly   132 YDHHNNRWQWS 142
            .:...:.|:|:
  Rat   174 RESSAHPWKWT 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgnNP_001246866.1 CLECT 74..200 CDD:153057 17/70 (24%)
Smc <405..>673 CDD:440809
CCDC47 <732..783 CDD:480722
Clec2dNP_569086.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..52
PHA02642 <71..230 CDD:165024 33/141 (23%)
Blue background indicates that the domain is not in the aligned region.

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