DRSC/TRiP Functional Genomics Resources

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Protein Alignment rgn and si:dkey-83f18.3

DIOPT Version :9

Sequence 1:NP_001246866.1 Gene:rgn / 40368 FlyBaseID:FBgn0261258 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_001093551.1 Gene:si:dkey-83f18.3 / 100002910 ZFINID:ZDB-GENE-070705-502 Length:361 Species:Danio rerio


Alignment Length:150 Identity:32/150 - (21%)
Similarity:61/150 - (40%) Gaps:36/150 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 CPPKFHRVGTDCYS----LVDQRSSWLEAHFFCKDKNANLTEPGKHADRKLRLFLQKQDALS-GE 122
            |..:|..|   |:.    ::.|..||.||..:|:..:.:|.     :.:.:.:..:..:.:. ..
Zfish   230 CDRQFPFV---CHEDKLIVIQQNLSWSEALRYCRQNHVDLV-----SVQSVEMQYEVMNVVKLAS 286

  Fly   123 NDPIWLGATYDHHNNRWQWSMSGRNLSTDSFSRTDSAYVQLISNSQPLDNNCAIYDPSLK----- 182
            .:.:|||..:.|....|.| :||..:          .|......:..|:.:|   :|:::     
Zfish   287 TEAVWLGLRFSHILGIWFW-VSGETV----------YYCNWAPGNGTLEEDC---EPTVRSGAVQ 337

  Fly   183 ----YRWSARPCSDKLRFIC 198
                ..|.:||.:|||.|||
Zfish   338 SGGDQTWISRPETDKLNFIC 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rgnNP_001246866.1 CLECT 74..200 CDD:153057 28/138 (20%)
GBP_C <414..508 CDD:303769
TPH 421..756 CDD:290579
coiled coil 483..494 CDD:293879
si:dkey-83f18.3NP_001093551.1 CLECT 23..124 CDD:295302
CLECT 127..239 CDD:295302 3/11 (27%)
CLECT 245..359 CDD:153057 27/131 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
00.000

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