DRSC/TRiP Functional Genomics Resources

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Protein Alignment ebd2 and Jrk

DIOPT Version :10

Sequence 1:NP_649307.1 Gene:ebd2 / 40363 FlyBaseID:FBgn0037076 Length:367 Species:Drosophila melanogaster
Sequence 2:NP_001098082.1 Gene:Jrk / 315073 RGDID:1306316 Length:557 Species:Rattus norvegicus


Alignment Length:255 Identity:55/255 - (21%)
Similarity:99/255 - (38%) Gaps:68/255 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 KGIKSRRNERNILTFYEKIAVIRYYDETNISRNSLAKMFHCCATQIRRILDKKKDLLQQLATLSE 85
            || |..:.:|.:||..|||.:.... |...||.:|.:.::   ..:..:.|.|....|.|:..:.
  Rat     9 KG-KGEKRKRVVLTLKEKIDICSRL-ERGESRKALMQEYN---VGMSTLYDIKAHKAQLLSFFAS 68

  Fly    86 ADASIIIEEMTRKRRKFEMSAISFL---LHEW--VERCIQMQLNISIRNQKLKETAIRMAAVLNL 145
            :|:...:|:    ||......:..|   |:||  |:|...:.::..:..:|.|:...:|...   
  Rat    69 SDSRQALEQ----RRTLHTPKLEHLDRVLYEWFLVKRAEGIPVSGPMLIEKAKDFYKQMRLT--- 126

  Fly   146 PSFRP---SYRWLSRFRNKY---KYEADELGYQGENPLNQDLPVEDIIVEFKHALPNFMQRELDN 204
               .|   |..||.||:.::   |.:|..                              ::::.:
  Rat   127 ---EPCVFSGGWLWRFKARHGIKKLDASS------------------------------EKQVAD 158

  Fly   205 PGEAISKAAVMADFVNLSSENSIMSDHPEGDNEVELV-TCEPTMMSSPSSTPDAAEGEIP 263
            |..|   ......|.:|::|:.:..:.....:|..|| .|      .||||||  :|.:|
  Rat   159 PQAA---EQFCGFFRSLAAEHGLSPEQVYSADETGLVWRC------LPSSTPD--DGTVP 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ebd2NP_649307.1 CENP-B_N 27..80 CDD:461229 13/52 (25%)
CENPB 101..166 CDD:197828 16/75 (21%)
JrkNP_001098082.1 CENP-B_N 14..66 CDD:461229 14/55 (25%)
CENPB 83..147 CDD:197828 15/69 (22%)
DDE_1 213..382 CDD:367380
Blue background indicates that the domain is not in the aligned region.

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