DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tbc1d8-9 and tbc1d2b

DIOPT Version :10

Sequence 1:NP_649305.1 Gene:Tbc1d8-9 / 40361 FlyBaseID:FBgn0037074 Length:1291 Species:Drosophila melanogaster
Sequence 2:XP_012822167.2 Gene:tbc1d2b / 734055 XenbaseID:XB-GENE-5932742 Length:944 Species:Xenopus tropicalis


Alignment Length:842 Identity:185/842 - (21%)
Similarity:323/842 - (38%) Gaps:264/842 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LLLPS----AFWIAEMHSRYFVLQKRRGHGESRGFGSMLVGTYDSVMNTKPAPYRILHQTPSSEV 68
            |..||    .:|:.|:.      |||..:..|  ||::   ..:||:|  ||             
 Frog   109 LRAPSRHAMTYWLQELQ------QKRWEYCNS--FGAL---KRESVIN--PA------------- 147

  Fly    69 SYEIAIGITQDEI--------VKDWEWLKANLF------KVLDEMENEDEVTNFTICKIQSLYTQ 119
            |.::.||:...|.        :.|.|..: |.|      .||.:..:.::.:| ....:|.|..|
 Frog   148 STKVPIGLVARESPDYMGIPNINDAERAR-NQFAVETCPSVLGDQTSAEQASN-NPAAVQVLLRQ 210

  Fly   120 NNQD--------DTGESADFKVMKSKFRQIFKMPEEERLVISYSATYVKNKIPRQGQLYISLNHV 176
            .:.|        ..|:|:|.:      :..|...||..|:         |..|:  :|..||.||
 Frog   211 WSNDIRSSMQHLRPGKSSDCR------KSTFYTNEEWELL---------NPTPK--ELEESLLHV 258

  Fly   177 ----------------CFYSYMLG---QEIKRIIRFAELEDISRNANTIYLKTTNNMTYNFTMLF 222
                            ..:.:..|   |..:|.:|  |:..:::|.......:           .
 Frog   259 EKRKPPTEGIKGSTAGMSFPFDFGRIPQRARRPLR--EIMGVNKNRTECLADS-----------L 310

  Fly   223 NASDAHLLIEQLNKMAIQQLIHDPDSPVVDHDTSNFSRLGSKTSKKPVLLRDLTARQKSEEFRIY 287
            ..||:.:..:.|.|:..|:              ....||......:..|:|.|....:|.::..|
 Frog   311 PVSDSRMESDVLLKLQSQE--------------EELERLKKDLLSQKELVRLLQQSLRSSQYDKY 361

  Fly   288 FRLPQSEIIDGKIKANIWTPYSK--------------RFNSGFIYLS-PNFFCFRSDVKDLVSVV 337
            |..|   ..||..|.::.....|              ......::.. ....|...::||.::::
 Frog   362 FASP---FCDGLSKEHLHLLQQKDTQIQELNHLLERQTLEKDHLHQEVEELKCSVKELKDQLNMM 423

  Fly   338 IPMKTIKSVEKKDDGQQRFENQI---------VIITSENVPF-------------MFAHIVDRAV 380
              |:||::   ||:...|...|:         ..:.:| :|.             :..:......
 Frog   424 --METIQA---KDEVIMRLSRQLSKYEQHTPSSTVAAE-IPVAPQLEELNRLQDSLQGYKAQNTF 482

  Fly   381 LISKITDLLARVHVPLSRER----------AKYDISWSKQTALMNTFKT-----------QFSAE 424
            |..:|.:|.|.......|||          ||.....||...|:...||           :|..:
 Frog   483 LNKEILELSALRRNAERREREMEARYSNLEAKMCQIESKYLVLLQEMKTPVCSDDQGTAREFVNQ 547

  Fly   425 IIQ------------------------------------KQEEKM-------------------- 433
            :::                                    ::|||:                    
 Frog   548 LLEDALKVENAEQPEHTFVKPHTVSKYDIHGFLIVPEDDEEEEKLVAKVRALDLKTLSLTENQEI 612

  Fly   434 ---VRWEAHF-----RDFGRGIGMFRTTDVINLIVEGIPDKLRQEIWLIFSGAIHDKEMN----P 486
               |:|:.:|     |:      |..:.::..|:..|||.:.|..:|..|:. :|.|::.    |
 Frog   613 SNVVKWDNYFASTVNRE------MACSPELKALVRNGIPHEHRSRMWKWFTN-LHIKKLKDEAAP 670

  Fly   487 GLYEDLVEKAACIKNCFAHDEIDRDLPRSLP--EHPAFQSTDGIGALRRVLQAYALRNPQVGYCQ 549
            |.::.|::.|...:|. |..:|:.||.|:||  :|....:::||..||.||.||:.|||.:||||
 Frog   671 GYFQSLLQNALEKQNP-ASKQIELDLMRTLPNNKHYTSPTSEGIQKLRNVLLAYSWRNPDIGYCQ 734

  Fly   550 AMNIVSSVFLLFCDEENAFWMLASLCENLLP-DYYKDKVVGAQIDQGVLNELVETHLPDLHGHLE 613
            .:|.::::.||:.|:|:|||.|.::.|..:| |||...::|:|:||.|..:|:...||.|..|.|
 Frog   735 GINRLAAIALLYLDQEDAFWCLVTIVEAFMPRDYYTKTLLGSQVDQRVFKDLMNEKLPRLCAHFE 799

  Fly   614 QLGV-IKMISISWFLTIFMSVISYESSLHILDCFFYEGAKIIFMISLQIIEWNRDKLLICQD 674
            |..| ..:|:.:|||.:|:..:..:....|.|...|||:|:||..:|.:.::..:::|..||
 Frog   800 QYKVDYTLITFNWFLVVFVDSVVSDILFRIWDSLLYEGSKVIFRFALGLFKYKEEEILKLQD 861

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tbc1d8-9NP_649305.1 PH-GRAM1_TCB1D8_TCB1D9_family 147..249 CDD:275404 20/120 (17%)
PH-GRAM2_TCB1D9_TCB1D9B 293..389 CDD:270161 18/132 (14%)
TBC 462..670 CDD:214540 77/215 (36%)
tbc1d2bXP_012822167.2 PH_TBC1D2A 34..134 CDD:269966 8/30 (27%)
Smc 322..>560 CDD:440809 43/260 (17%)
TBC 640..857 CDD:214540 77/218 (35%)

Return to query results.
Submit another query.