DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab26 and Rab1b

DIOPT Version :10

Sequence 1:NP_001097658.1 Gene:Rab26 / 40359 FlyBaseID:FBgn0086913 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_083852.1 Gene:Rab1b / 76308 MGIID:1923558 Length:201 Species:Mus musculus


Alignment Length:174 Identity:82/174 - (47%)
Similarity:123/174 - (70%) Gaps:8/174 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 EFDIMGKVIMLGDSGVGKTSLLIRFRDGRYVPSYFLSTVGIDFRNKVVVVDGTRVKLQIWDTAGQ 272
            |:|.:.|::::|||||||:.||:||.|..|..|| :||:|:||:.:.:.:||..:||||||||||
Mouse     4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESY-ISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67

  Fly   273 ERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGNKADCSGS---E 334
            ||||::|.:|||.||.::::||||::.:|.|::.||.||..||.|:|..:|:|||:|.:..   :
Mouse    68 ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVD 132

  Fly   335 RQVKREDGERLGREHNVPFMETSAKTGLNVELSFTAVARQLKSR 378
            ....:|..:.||    |||:|||||...|||.:|..:|.::|.|
Mouse   133 NTTAKEFADSLG----VPFLETSAKNATNVEQAFMTMAAEIKKR 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab26NP_001097658.1 Rab26 214..407 CDD:206695 80/168 (48%)
Rab1bNP_083852.1 Rab1_Ypt1 7..172 CDD:206661 79/169 (47%)
Switch 1. /evidence=ECO:0000250|UniProtKB:Q9H0U4 30..45 7/15 (47%)
Switch 2 region, required for interaction with REP1/CHM. /evidence=ECO:0000250|UniProtKB:Q9H0U4 64..83 13/18 (72%)
Switch 2. /evidence=ECO:0000250|UniProtKB:Q9H0U4 65..80 10/14 (71%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 174..201
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.