DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab26 and RabX1

DIOPT Version :9

Sequence 1:NP_001097658.1 Gene:Rab26 / 40359 FlyBaseID:FBgn0086913 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_524713.1 Gene:RabX1 / 44172 FlyBaseID:FBgn0015372 Length:261 Species:Drosophila melanogaster


Alignment Length:215 Identity:74/215 - (34%)
Similarity:116/215 - (53%) Gaps:26/215 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 IMGKVIMLGDSGVGKTSLLIRF------RDGRYVPSYFLSTVGIDFRNKVVVVDGTRVKLQIWDT 269
            |.|||::||..|||||.|:||:      |....||     |:.:.|....:::|..::|||||||
  Fly     4 IEGKVLVLGSRGVGKTRLVIRYIKNTLHRKESEVP-----TIAVSFFTCNIILDEVKIKLQIWDT 63

  Fly   270 AGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGNKADCSGSE 334
            |||||:|:|...|||:|:|.:|::|:|...|:..|::|:.|:....|:.:::.|:|||.|.. ::
  Fly    64 AGQERYRAVAPMYYRNANAAILVFDLTQYKTFTEIKSWIQELHRNVQDPMILTLVGNKMDMQ-AQ 127

  Fly   335 RQVKREDGERLGREHNVPFMETSAKTGLNVELSFTAVARQLKSRGYEHGDDGK------FNVHD- 392
            |.|.||:...........:.|||.:|...:|..|.:.|:.|    ....|:||      |...| 
  Fly   128 RAVSREEAFVFATSIGATYFETSTETDQGLEQVFISTAQGL----VRLADEGKSPSLRSFQSTDS 188

  Fly   393 --FVRDNTK-ARSVCAQCRN 409
              :...||. :.:|.|..|:
  Fly   189 LAYTNTNTAFSHTVAALARS 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab26NP_001097658.1 Rab26 214..407 CDD:206695 71/208 (34%)
RAB 214..378 CDD:197555 62/169 (37%)
RabX1NP_524713.1 Ras 7..166 CDD:278499 60/164 (37%)
Rab 7..166 CDD:206640 60/164 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454443
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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