DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab26 and Rab3d

DIOPT Version :10

Sequence 1:NP_001097658.1 Gene:Rab26 / 40359 FlyBaseID:FBgn0086913 Length:410 Species:Drosophila melanogaster
Sequence 2:NP_114080.2 Gene:Rab3d / 19340 MGIID:97844 Length:219 Species:Mus musculus


Alignment Length:178 Identity:78/178 - (43%)
Similarity:113/178 - (63%) Gaps:7/178 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 MISSSKAPEE-----EDEFDIMGKVIMLGDSGVGKTSLLIRFRDGRYVPSYFLSTVGIDFRNKVV 255
            |.|:|:.|..     :..||.|.|::::|:|.|||||.|.|:.|..:.|: |:|||||||:.|.|
Mouse     1 MASASEPPASPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPA-FVSTVGIDFKVKTV 64

  Fly   256 VVDGTRVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVV 320
            .....|:||||||||||||:|::|.||||.|...||:||:.|:.::..::.|..:|:.|:.::..
Mouse    65 YRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQ 129

  Fly   321 IVLIGNKADCSGSERQVKREDGERLGREHNVPFMETSAKTGLNVELSF 368
            ::|:|||.|.. .||.|..|||.||..:....|.|.|||..:||:..|
Mouse   130 VILVGNKCDLE-DERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab26NP_001097658.1 Rab26 214..407 CDD:206695 71/155 (46%)
Rab3dNP_114080.2 Rab3 22..186 CDD:206657 72/157 (46%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P63012 49..58 6/9 (67%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P63012 80..96 10/15 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 190..219
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.