DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pc and cbx8b

DIOPT Version :9

Sequence 1:NP_524199.1 Gene:Pc / 40358 FlyBaseID:FBgn0003042 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_001019586.1 Gene:cbx8b / 799361 ZFINID:ZDB-GENE-050522-325 Length:361 Species:Danio rerio


Alignment Length:404 Identity:93/404 - (23%)
Similarity:158/404 - (39%) Gaps:101/404 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 VYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQTNKSSGT--PSKRGI 87
            |:|||.||::|:::|.:||.||||||:.:|:|||||.||||.||...:|:..:....  |.|||.
Zfish    10 VFAAESIIKRRIRRGHMEYLVKWKGWSPKYSTWEPEENILDPRLFVAFEEREREREIFGPKKRGP 74

  Fly    88 KKKEKEPDPEPESEEDEYTFTENDVDTHQATTSS-----ATHDKESKK----------------- 130
            |.|......:.:.:...|.|..:.......|.||     |...:|..:                 
Zfish    75 KLKTFLLKAQAKEKAKSYEFRNDSSRGIHVTYSSPEPVVAPRAREGLRAVVPTIFPPSTVNRGES 139

  Fly   131 ------EKKHHHHHHH----HHHIKSERNSGRRSESPLTHHHHHH-HHESKRQRIDHSSSSNSSF 184
                  |.:.||..|.    .....:.:..||:.:...|..:..: |.|..::..|.:.:|    
Zfish   140 VRLQSPEPREHHSPHSPRPTDEFSLTPKKRGRKPKLRFTDGYTSNLHPEHVKRAADETMAS---- 200

  Fly   185 THNSFVPEPDSNSSSSEDQPLIGTKRKAEVLKESGKIGVTIK------TSPDGPTIKPQPTQQVT 243
                 :|...:.....||.     :|..::   ||::.::.|      :......|..:.|..::
Zfish   201 -----IPSKMAKLGLGEDD-----ERCPDI---SGRLKISHKDLDATCSHKQSNVIPSRSTLHIS 252

  Fly   244 PSQQQPFQDQQQAEKIASEAATQLKSEQQATPLATEAINTTPAESGAEEEEVAN-------EEGN 301
            |.                   ..|.|.:....|...  .|.|..:...::.:.:       |.|:
Zfish   253 PQ-------------------WSLHSSRMEAGLLGH--RTNPQSNHFHQKHLKHYSKKRTLEHGD 296

  Fly   302 QQAPQVPSENNNIPKPCNNLAINQKQPLTPLSPRALPPRFWLPAKCNISNRVVITDVTVNLETVT 366
            ..:.| ||             :..|.|::.:.........|.|:..|: .:|::||||.|..|||
Zfish   297 STSRQ-PS-------------LIAKIPVSHIFREPGVEDAWRPSVINV-EKVIVTDVTTNFLTVT 346

  Fly   367 IRECKTERGFFRER 380
            |:|..|:.|||:::
Zfish   347 IKESNTDEGFFKDK 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PcNP_524199.1 CHROMO 25..77 CDD:214605 29/51 (57%)
cbx8bNP_001019586.1 Chromo 14..57 CDD:278797 25/42 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 71 1.000 Domainoid score I9354
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 121 1.000 Inparanoid score I4728
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25567
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR46389
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2447
SonicParanoid 1 1.000 - - X2049
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
88.190

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