DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pc and cbx8

DIOPT Version :9

Sequence 1:NP_524199.1 Gene:Pc / 40358 FlyBaseID:FBgn0003042 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_001072443.1 Gene:cbx8 / 779897 XenbaseID:XB-GENE-977527 Length:362 Species:Xenopus tropicalis


Alignment Length:406 Identity:105/406 - (25%)
Similarity:166/406 - (40%) Gaps:104/406 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 VYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYE--QTNKSSGTPSKRGI 87
            |:|||.::::|::||.:||.||||||:|:|:|||||.||||.||:..:|  :..:....|.||| 
 Frog    10 VFAAESLLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLVAAFEDREREREMYGPKKRG- 73

  Fly    88 KKKEKEPDPEPESEEDEYTFTENDVDTHQATTSSATHD--KESKKEKKHHHHHHHHHHIKSERNS 150
                    |:|:      ||    :...||..::.|::  .||.:..:..:..|....:.|....
 Frog    74 --------PKPK------TF----LLKAQAKANAKTYEFRSESTRGVRIPYPGHPPQELPSRSRE 120

  Fly   151 GRRSESPLTHHHHHHHHESKRQRIDHSSSSNSSFTHNSFVPEPDSNSSSSEDQPL-IGTKRK--- 211
            |.||                   |..||..:|:...:.|...........|..|: |..|:|   
 Frog   121 GLRS-------------------IPTSSQGSSATRGDIFSERLGRTEMRGEHYPMKIKRKKKHHS 166

  Fly   212 AEVLKESGKIGVTIKTSPDGPTIKPQPTQQVTPSQQQPFQDQQQAEKI-ASEAATQLKSEQQATP 275
            .:.|.|.|...:.|.|:     |.....:.||.|.:   .|...|.|. |..:..|| :.:|.|.
 Frog   167 DKGLCEVGNQAIRISTA-----ISSNQLETVTGSAR---TDNPSAGKYHAPHSVIQL-ARRQDTD 222

  Fly   276 LATEAINTTPAESGAEEEEVANEEGNQQAPQVPSEN------------------NNIPKPCNNLA 322
            |...: :..|  .....|....:.|.....|:.::|                  :::.:..|:|.
 Frog   223 LGPSS-HVGP--GFMHRERALTQTGQDIQEQLSTDNHPHRTKHRVDFMASVCKESSVSRSRNSLG 284

  Fly   323 INQ---------------------KQPLTPL--SPRALPPRFWLPAKCNISNRVVITDVTVNLET 364
            ..:                     :.|:..:  .|...|   |.|...|. .:||:||||.|..|
 Frog   285 YQEQISDFYRGALGTHGGKPSLIARIPVARILGEPEEEP---WRPPVENF-EKVVVTDVTSNFLT 345

  Fly   365 VTIRECKTERGFFRER 380
            |||:|..|::|||:|:
 Frog   346 VTIKESNTDQGFFKEK 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PcNP_524199.1 CHROMO 25..77 CDD:214605 29/53 (55%)
cbx8NP_001072443.1 CD_Cbx6 8..65 CDD:349295 29/54 (54%)
CBX7_C <332..354 CDD:375056 12/21 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 70 1.000 Domainoid score I9355
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 121 1.000 Inparanoid score I4605
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm48625
Panther 1 1.100 - - LDO PTHR46389
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2049
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.150

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