DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pc and cbx5

DIOPT Version :9

Sequence 1:NP_524199.1 Gene:Pc / 40358 FlyBaseID:FBgn0003042 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_001073653.1 Gene:cbx5 / 563396 ZFINID:ZDB-GENE-030131-5553 Length:204 Species:Danio rerio


Alignment Length:127 Identity:38/127 - (29%)
Similarity:63/127 - (49%) Gaps:2/127 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GKGSKGKLGRDNATDDPVDLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLI 69
            ||.|:.:...:.|:.|..:  |..||::.:||.||.|||.:||||:.:::||||||.|:....||
Zfish     2 GKKSQNREDDEAASSDEEE--YVVEKVLDRRVVKGRVEYFLKWKGFTEKHNTWEPEKNLDCPELI 64

  Fly    70 DIYEQTNKSSGTPSKRGIKKKEKEPDPEPESEEDEYTFTENDVDTHQATTSSATHDKESKKE 131
            ..:.:|.|...:.|....|.....|......:....:.|....::.:...||:...|:.:.|
Zfish    65 SEFMKTYKKGNSASPPSSKSSSTGPSSARPKDSSGSSSTSKRKNSEEENGSSSKPKKKKEDE 126

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PcNP_524199.1 CHROMO 25..77 CDD:214605 24/51 (47%)
cbx5NP_001073653.1 Chromo 21..69 CDD:306815 23/47 (49%)
Chromo_shadow 138..190 CDD:307518
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 1 1.000 - - FOG0000191
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.920

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