DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pc and cbx6b

DIOPT Version :9

Sequence 1:NP_524199.1 Gene:Pc / 40358 FlyBaseID:FBgn0003042 Length:390 Species:Drosophila melanogaster
Sequence 2:XP_005171671.2 Gene:cbx6b / 556231 ZFINID:ZDB-GENE-110613-1 Length:1058 Species:Danio rerio


Alignment Length:488 Identity:112/488 - (22%)
Similarity:165/488 - (33%) Gaps:167/488 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 DLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQTNKSSGT--PSKR 85
            |.|:|||.|:::||:||.:||.||||||..:|:|||||.||||.||:..:||..:....  |.||
Zfish     8 DRVFAAEAILKRRVRKGRMEYLVKWKGWAIKYSTWEPEENILDERLVAAFEQKEREQEMYGPKKR 72

  Fly    86 GIKKK-------------------------EKEPDPEPESEEDEYTFTENDVDTHQATTSSATHD 125
            |.|.|                         ..:|.|.|......||.|.    ...|...|.|..
Zfish    73 GPKPKTLLLKSRAQAESPRVPEFKHSRPQPHSKPPPPPPPAAPSYTPTA----PSNAKLQSGTAQ 133

  Fly   126 KESKKEKKHHHHH-------HHHHHI--------------------------------------- 144
            .:.||: .|..|.       ...|.:                                       
Zfish   134 PKLKKD-IHRCHRMARRPLPRQDHTVGPSGPFSSRPTVSAFSETVRILNRKVKPREVKKGRVILN 197

  Fly   145 -----KSERN---SGRRSESPLTHHHHHHHHE-SKRQRI-------------------------- 174
                 |:|..   :.:|:..|.|...|....: ..|.|:                          
Zfish   198 LKVLDKAENTAVANNKRTHVPSTQQSHFGRQKIPSRNRVIGKNRRFGEVSYRGIQPPIRGSGFPV 262

  Fly   175 ------DHS-SSSNSSFTHNSFVPEPDSNSSSSEDQPLI----GTKRKAEVLKESGKIGVTIKTS 228
                  .|| .::.|..:.||..    :|.|||:...|:    |..|..|....:....|:    
Zfish   263 FGKLFDSHSLKNAESGESRNSMT----NNLSSSQSSKLLDVSKGQNRNEEPPPSNSSSEVS---- 319

  Fly   229 PDGPTIKPQPTQQVTPSQQQPFQDQQQAEKIASEAATQLKSEQQAT-PLATE-------AINTTP 285
             ||....|:.||    ||....|.:..:.|..|..|......:..| |:|::       |:.::|
Zfish   320 -DGEPPSPRQTQ----SQHSSLQPKASSTKSPSTKAPDPTLHKLGTQPVASKNKDSASSALPSSP 379

  Fly   286 AESGAEEEEVANEEGNQQAP-QVPSENNNIPKPCNNLAINQKQPLTPLSPRALP----------- 338
            ..|.:.....::|:...... .||.|.:.        .:.::.|.:...|..:|           
Zfish   380 MFSSSSSASTSSEDNEHILDLSVPHEMDR--------RLRRRHPFSGRHPLKVPEVPVSEEPSEE 436

  Fly   339 --PRFWLPAKCNISNRVVITDVTVNLETVTIRE 369
              ...|.|...:....||:||:|.||.||||:|
Zfish   437 EEDLDWRPDMTSRCANVVVTDITANLLTVTIKE 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PcNP_524199.1 CHROMO 25..77 CDD:214605 31/51 (61%)
cbx6bXP_005171671.2 CHROMO 10..62 CDD:214605 31/51 (61%)
SSL_OB 275..>368 CDD:332684 26/105 (25%)
CBX7_C 441..473 CDD:319236 14/29 (48%)
SMC_N <667..855 CDD:330553
LamG 839..1050 CDD:328935
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 71 1.000 Domainoid score I9354
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 121 1.000 Inparanoid score I4728
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25567
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2049
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
66.050

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