DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pc and cbx6

DIOPT Version :9

Sequence 1:NP_524199.1 Gene:Pc / 40358 FlyBaseID:FBgn0003042 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_001016617.1 Gene:cbx6 / 549371 XenbaseID:XB-GENE-951161 Length:361 Species:Xenopus tropicalis


Alignment Length:408 Identity:107/408 - (26%)
Similarity:156/408 - (38%) Gaps:124/408 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 VYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQTNKSSGT--PSKRGI 87
            |:|||.|:::|::||.:||.||||||..:|:|||||.||||.|||..:||..:....  |.|||.
 Frog    10 VFAAESIMKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIVAFEQKEREQEIYGPKKRGP 74

  Fly    88 KKKEKEPDPEPESEEDEYTFTENDVDTHQATTSSATHDKESKKEKKHHHHHHHHHHIKSERNSGR 152
            |.|........::|    ....|||                              |...:..|  
 Frog    75 KPKTFLMKARAQAE----ALRLNDV------------------------------HFTMKPGS-- 103

  Fly   153 RSESPLTHHHHHHHHESKRQRIDHSSSSNSSFTHNSFVPEPDSNSSS-------------SEDQP 204
             |.||..|.....|...|..|..||.|...       :|.||..:.|             ||...
 Frog   104 -SPSPKLHSSAAVHRLKKDIRRCHSMSRRP-------LPRPDPTAPSGTGSGMRPPVSPFSETVR 160

  Fly   205 LIGTKRKAEVLKESGKIGVTIKTSPDG---PTIKPQPTQQVTPSQQQPF-QDQQQAEKIASEAAT 265
            :|..|.|....|.: :|.:.:|....|   |..:|:     .||:.:.. :.::.:|.:......
 Frog   161 IINRKAKPREPKRN-RIILNLKVIDKGTKAPLGRPK-----IPSRNRVIGKSKKYSESMLRNQIR 219

  Fly   266 QLKSEQQATPLATEAINTTPA---ESGAEEEEVANEEGNQQAPQVPSENNNIPKPCNNLAINQKQ 327
            .||       ....::...||   ...|::.:.|.:||       .:::::....|.:.|.:..:
 Frog   220 HLK-------YGAFSLYNNPALQDPGAAKDGDEATQEG-------LADDSSSTSGCPSPAPSDDR 270

  Fly   328 P--LTP--LSPR------------ALPPRF--------------------WLPAKCNISNRVVIT 356
            |  |.|  |||.            ::||..                    |.|.....|| ||:|
 Frog   271 PPKLMPETLSPAVPDWRESEALDLSIPPESSASKRGQGEPEESDVDETGDWRPDMSPCSN-VVVT 334

  Fly   357 DVTVNLETVTIRE-CKTE 373
            |||.||.||||:| |..:
 Frog   335 DVTSNLLTVTIKEFCNAQ 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PcNP_524199.1 CHROMO 25..77 CDD:214605 31/51 (61%)
cbx6NP_001016617.1 CD_Cbx6 8..65 CDD:349295 31/54 (57%)
CBX7_C 320..351 CDD:375056 18/31 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 70 1.000 Domainoid score I9355
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 121 1.000 Inparanoid score I4605
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm48625
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2049
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.060

Return to query results.
Submit another query.