DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pc and Npcd

DIOPT Version :9

Sequence 1:NP_524199.1 Gene:Pc / 40358 FlyBaseID:FBgn0003042 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_001013380.2 Gene:Npcd / 504193 MGIID:3845555 Length:469 Species:Mus musculus


Alignment Length:315 Identity:87/315 - (27%)
Similarity:114/315 - (36%) Gaps:79/315 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 VYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQTNKSSGT--PSKRGI 87
            |:|||.||::|::||.:||.||||||..:|:|||||.||||.|||..:||..:....  |.|||.
Mouse    10 VFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKERERELYGPKKRGP 74

  Fly    88 KKKEKEPDPEPESEEDEYTFTENDVDTHQATTSSATHDKESKKEKKHHHHHHHHHHIKSERNSGR 152
            |.|........::|....:      |.|.:...||     |....|.|.....|...|..|...|
Mouse    75 KPKTFLLKARAQAEALRIS------DVHFSVKPSA-----SASSPKLHSSAAVHRLKKDIRRCHR 128

  Fly   153 RSESPLTHHHHHHHHESKRQRIDHSSSSNSSFTHNSFVPEPDSNSSS----------SEDQPLIG 207
            .|..||                                |.||....|          ||...:|.
Mouse   129 MSRRPL--------------------------------PRPDPQGGSPGLRPPISPFSETVRIIN 161

  Fly   208 TKRKAEVLKESGKIGVTIKTS-PDGPTIKPQPTQQVTP---SQQQPFQDQQQAEKIASE---AAT 265
            .|.|....|.: :|.:.:|.. |....|...|...:..   |:....:.|..|:.:|.|   ||.
Mouse   162 RKVKPREPKRN-RIILNLKQELPARGNISSAPAPAMPTALHSKMDELEGQLLAKVLALEKERAAL 225

  Fly   266 QLKSEQQATPLATEAINTTPAESGAEEEEVANEEGNQQA--------PQVPSENN 312
            ...|.||...:..|.        .|.:..||..|....|        ..:|..||
Mouse   226 SHGSHQQRQEVEKEL--------NALQGRVAELEHGSSAYSPPDAFKVSIPIRNN 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PcNP_524199.1 CHROMO 25..77 CDD:214605 32/51 (63%)
NpcdNP_001013380.2 CHROMO 10..62 CDD:214605 32/51 (63%)
PTX 257..463 CDD:128463 3/16 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2748
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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