DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pc and HP1e

DIOPT Version :9

Sequence 1:NP_524199.1 Gene:Pc / 40358 FlyBaseID:FBgn0003042 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_649878.1 Gene:HP1e / 41108 FlyBaseID:FBgn0037675 Length:174 Species:Drosophila melanogaster


Alignment Length:90 Identity:29/90 - (32%)
Similarity:42/90 - (46%) Gaps:13/90 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 DNATDDPVDLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQTNKSS 79
            :|:||......|..|:|:.:|...|.::|.|||..::...||||...::....|||..| :.|| 
  Fly    16 ENSTDFEETEEYIVERILDRRHYMGQLQYLVKWLDYSDEDNTWESAADLDCHSLIDSIE-SQKS- 78

  Fly    80 GTPSKRG--------IKKKEKEPDP 96
               .|||        .|.|..:.||
  Fly    79 ---LKRGQELNNQYETKAKRLKIDP 100

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PcNP_524199.1 CHROMO 25..77 CDD:214605 17/51 (33%)
HP1eNP_649878.1 CHROMO 25..67 CDD:237991 13/41 (32%)
Chromo_shadow 113..164 CDD:279701
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 1 1.000 - - FOG0000191
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.920

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