DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pc and Cbx1

DIOPT Version :9

Sequence 1:NP_524199.1 Gene:Pc / 40358 FlyBaseID:FBgn0003042 Length:390 Species:Drosophila melanogaster
Sequence 2:XP_006247295.1 Gene:Cbx1 / 360609 RGDID:1310714 Length:193 Species:Rattus norvegicus


Alignment Length:79 Identity:31/79 - (39%)
Similarity:47/79 - (59%) Gaps:0/79 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQTNKSSGTPSKRGIKKK 90
            |..||::.:||.||.|||.:||||::...||||||.|:....||..:.|:.|::....|....|:
  Rat    21 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHETDKSDGGKR 85

  Fly    91 EKEPDPEPESEEDE 104
            :.:.|.|.:.||.:
  Rat    86 KADSDSEDKGEESK 99

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PcNP_524199.1 CHROMO 25..77 CDD:214605 24/50 (48%)
Cbx1XP_006247295.1 Chromo 27..70 CDD:278797 20/42 (48%)
Chromo_shadow 126..177 CDD:279701
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 1 1.000 - - FOG0000191
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

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