DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pc and Cbx6

DIOPT Version :9

Sequence 1:NP_524199.1 Gene:Pc / 40358 FlyBaseID:FBgn0003042 Length:390 Species:Drosophila melanogaster
Sequence 2:XP_006242056.1 Gene:Cbx6 / 315136 RGDID:1307314 Length:414 Species:Rattus norvegicus


Alignment Length:433 Identity:104/433 - (24%)
Similarity:152/433 - (35%) Gaps:135/433 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 VYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQTNKSSGT--PSKRGI 87
            |:|||.||::|::||.:||.||||||..:|:|||||.||||.|||..:||..:....  |.|||.
  Rat    10 VFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKERERELYGPKKRGP 74

  Fly    88 KKKEKEPDPEPESEEDEYTFTENDVDTHQATTSSATHDKESKKEKKHHHHHHHHHHIKSERNSGR 152
            |.|........::|....:      |.|.:...||     |....|.|.....|...|..|...|
  Rat    75 KPKTFLLKARAQAEALRIS------DVHFSVKPSA-----SASSPKLHSSAAVHRLKKDIRRCHR 128

  Fly   153 RSESPLTHHHHHHHHESKRQRIDHSSSSNSSFTHNSFVPEPDSN----------SSSSEDQPLIG 207
            .|..||                                |.||..          |..||...:|.
  Rat   129 MSRRPL--------------------------------PRPDPQGGNPGLRPPISPFSETVRIIN 161

  Fly   208 TKRKAEVLKESGKIGVTIKTSPDGP-----------TIKPQ-PTQQVTPSQQQPFQDQQQAEKI- 259
            .|.|....|.: :|.:.:|....||           ..:|: |::.....:.:.|.:.....:| 
  Rat   162 RKVKPREPKRN-RIILNLKVIDKGPGGGSTAQGTGALARPKVPSRNRVIGKSKKFSESMLRTQIR 225

  Fly   260 -----------------------ASEAATQLKSEQQATPLATEAINTTPAESGAEEEEVANEEGN 301
                                   .::.|:.......|||.|......:.:.||.....:.:.:.:
  Rat   226 HMKFGTFALYKPPPAPLVPSTAGKADVASSGPGLLLATPAAAPFDAHSSSSSGCPSPTLQSSDPD 290

  Fly   302 QQAPQVPSENNNIPKPCNNLAINQKQ---------PLTPLSPRALPPRF---------------- 341
            ...|::      :|:..:..|.|.::         |....:.:.:||..                
  Rat   291 DAPPKL------LPETISRSASNWRESEVLDLSIPPEAAATGQRVPPDVTAAAGQALHTVLEATG 349

  Fly   342 ----------WLPAKCNISNRVVITDVTVNLETVTIRE-CKTE 373
                      |.|.....|| ||:||||.||.||||:| |..|
  Rat   350 TGSSEPEAGDWRPEMSPCSN-VVVTDVTSNLLTVTIKEFCSPE 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PcNP_524199.1 CHROMO 25..77 CDD:214605 32/51 (63%)
Cbx6XP_006242056.1 CHROMO 10..62 CDD:214605 32/51 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 71 1.000 Domainoid score I9195
eggNOG 1 0.900 - - E1_KOG2748
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 124 1.000 Inparanoid score I4621
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45533
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2049
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.960

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