DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pc and Cbx5

DIOPT Version :10

Sequence 1:NP_524199.1 Gene:Pc / 40358 FlyBaseID:FBgn0003042 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_001100267.1 Gene:Cbx5 / 300266 RGDID:1306619 Length:191 Species:Rattus norvegicus


Alignment Length:128 Identity:39/128 - (30%)
Similarity:69/128 - (53%) Gaps:22/128 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 GSKGKLGRDNATDDPVDLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDI 71
            |.|.|...|:::.:..: .|..||::.:|:.||.|||.:||||:::.:||||||.|:....||..
  Rat     2 GKKTKRTADSSSSEDEE-EYVVEKVLDRRMVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISE 65

  Fly    72 YEQTNKSSGTPSKRGIKKKEKEPD-PEPESEEDEYTFTENDVDTHQATTSSATHDKESKKEKK 133
            :.:..|          |.||.|.: |..:||.::          .:::.|::..|.:|||:::
  Rat    66 FMKKYK----------KMKEGENNKPREKSEGNK----------RKSSFSNSADDIKSKKKRE 108

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PcNP_524199.1 CD_polycomb 23..76 CDD:349291 22/52 (42%)
CBX7_C 341..373 CDD:465385
Cbx5NP_001100267.1 CD_HP1alpha_Cbx5 19..68 CDD:349298 22/48 (46%)
CSD_HP1alpha_Cbx5 116..173 CDD:349302
Blue background indicates that the domain is not in the aligned region.

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