DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pc and chp2

DIOPT Version :10

Sequence 1:NP_524199.1 Gene:Pc / 40358 FlyBaseID:FBgn0003042 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_596808.1 Gene:chp2 / 2540047 PomBaseID:SPBC16C6.10 Length:380 Species:Schizosaccharomyces pombe


Alignment Length:228 Identity:51/228 - (22%)
Similarity:87/228 - (38%) Gaps:55/228 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LGRDNATDDPVDLVYAAEKIIQKRVKK--GVVEYRVKWKGWNQ-RYNTWEPEVNILD-RRLIDIY 72
            :....:.|...|..:|.|.|:..|:||  ...:|.:||:|::. ..|||..|.:... ..|||.|
pombe   162 IASSGSEDKNSDEEFAVEMILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELIDAY 226

  Fly    73 EQTNKSSGTPSKRGIKKKEKEPDPEPESEEDEYTFTENDVDTHQATTSSATHDKESKKEKKHHHH 137
            .::.  .|.|....:.:..:    ......:|.::.|.|       .||.:.|..|.|.::    
pombe   227 WESR--GGKPDLSSLIRLTR----SRARSSNEASYVEKD-------ESSNSDDSISYKRRR---- 274

  Fly   138 HHHHHHIKSERNSGRR---------SESPLTHHHHHHHHESKRQRIDHSSSSNSSFTHNSFVPEP 193
                     .||:..|         |||.:      ...:||.::...|..|:.:|       :|
pombe   275 ---------SRNAANRITDYVDSDLSESSM------KEKQSKIEKYMKSDKSSKNF-------KP 317

  Fly   194 DSNSSSSEDQPLIGTKRKAEVLKESGKIGVTIK 226
            .....|.||  |:...:..:.| ::||:...||
pombe   318 PFQKKSWED--LVDCVKTVQQL-DNGKLIAKIK 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PcNP_524199.1 CD_polycomb 23..76 CDD:349291 19/56 (34%)
CBX7_C 341..373 CDD:465385
chp2NP_596808.1 CD_Swi6_like 175..228 CDD:349287 18/52 (35%)
ChSh 316..380 CDD:197638 10/35 (29%)
Blue background indicates that the domain is not in the aligned region.

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