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Protein Alignment Pc and Cbx2
DIOPT Version :9
| Sequence 1: | NP_524199.1 |
Gene: | Pc / 40358 |
FlyBaseID: | FBgn0003042 |
Length: | 390 |
Species: | Drosophila melanogaster |
| Sequence 2: | XP_006532166.1 |
Gene: | Cbx2 / 12416 |
MGIID: | 88289 |
Length: | 594 |
Species: | Mus musculus |
| Alignment Length: | 172 |
Identity: | 44/172 - (25%) |
| Similarity: | 64/172 - (37%) |
Gaps: | 53/172 - (30%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 227 TSPDGPTIKPQPTQQVTPSQQQPFQDQQQAEKIASEAATQLKSEQQATPLATEAINT--TPAESG 289
:.|.|..:...|| |..:.||:..:|. |.|..:...:| :.|.||
Mouse 456 SGPTGANMTNAPT------------DNNKGEKLTCKAT--------ALPAPSVKRDTVKSVAASG 500
Fly 290 AEEEEVANEEG--------------NQQAPQVPSENNNIPKPCNNL--AINQKQPLTPLSPRALP 338
.:|...|..|| |..:...| ::.::|....|| ||...|.
Mouse 501 GQEGHTAPGEGRKPPALSELSTGEENSSSDSDP-DSTSLPSAAQNLSVAIQTSQD---------- 554
Fly 339 PRFWLPAKCNISNRVVITDVTVNLETVTIRECKTERGFFRER 380
|.|.: ::...|.:||||.||.|||::|..|..|||..|
Mouse 555 ---WKPTR-SLIEHVFVTDVTANLITVTVKESPTSVGFFNLR 592
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| Pc | NP_524199.1 |
CHROMO |
25..77 |
CDD:214605 |
|
| Cbx2 | XP_006532166.1 |
CBX7_C |
553..585 |
CDD:375056 |
14/45 (31%) |
|
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
| Tool |
Simple Score |
Weighted Score |
Original Tool Information |
| BLAST Result |
Score |
Score Type |
Cluster ID |
| Compara |
0 | 0.000 |
Not matched by this tool. |
| Domainoid |
1 |
1.000 |
71 |
1.000 |
Domainoid score |
I9385 |
| eggNOG |
1 |
0.900 |
- |
- |
|
E1_KOG2748 |
| Hieranoid |
0 | 0.000 |
Not matched by this tool. |
| Homologene |
0 | 0.000 |
Not matched by this tool. |
| Inparanoid |
0 | 0.000 |
Not matched by this tool. |
| Isobase |
0 | 0.000 |
Not matched by this tool. |
| OMA |
0 | 0.000 |
Not matched by this tool. |
| OrthoDB |
1 |
1.010 |
- |
- |
|
D1628171at2759 |
| OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
| OrthoInspector |
1 |
1.000 |
- |
- |
|
otm43469 |
| orthoMCL |
0 | 0.000 |
Not matched by this tool. |
| Panther |
0 | 0.000 |
Not matched by this tool. |
| Phylome |
0 | 0.000 |
Not matched by this tool. |
| RoundUp |
0 | 0.000 |
Not matched by this tool. |
| SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
| SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
| TreeFam |
1 |
0.960 |
- |
- |
|
|
|
5 | 4.870 |
|
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