DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pc and cbx4

DIOPT Version :9

Sequence 1:NP_524199.1 Gene:Pc / 40358 FlyBaseID:FBgn0003042 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_001096327.1 Gene:cbx4 / 100124911 XenbaseID:XB-GENE-986716 Length:507 Species:Xenopus tropicalis


Alignment Length:505 Identity:106/505 - (20%)
Similarity:177/505 - (35%) Gaps:171/505 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 VYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYE---------------- 73
            |:|.|.|.:||::||.|||.|||:||:.:|||||||.||||.||:..::                
 Frog    10 VFAVESIEKKRIRKGRVEYLVKWRGWSSKYNTWEPEENILDPRLLVAFQNRERQEQIMGYRKRGP 74

  Fly    74 --------------QTNKSSGTPSKRGIKKKEKEPDPEPESEEDEYTFTENDVDTHQATTSSATH 124
                          ::|..:|.....|..:.:.:..|.|:|:..:|..  |....||...|...|
 Frog    75 KPKHHIVSIPSFARRSNVLNGRNDSPGENRTKLDLGPIPKSQPHQYQL--NSKKHHQYQPSGKDH 137

  Fly   125 DKES--KKEKKHHH------HHHHHHHIKSERNSGRRSESPLTHHHHHHHHESKRQRIDHSSSSN 181
            :::.  ..:||:::      |||:....|.........||.::....:.|.||..    |:.:::
 Frog   138 NEKHHLNTKKKYYYQLNSKKHHHYQPDPKMYEQYALGKESQISTDPSNRHRESWA----HTKAAD 198

  Fly   182 -------------SSFTHNSFVPEPDSN---SSSSEDQPLIGTKRKAEVLK-------------- 216
                         |....|..     ||   ||.|::.|..|...|.:::|              
 Frog   199 VGTQMKNGTDPVLSGLERNGL-----SNGVSSSPSKELPSNGIGGKMKIVKNKNKNGRIVIVMSK 258

  Fly   217 --ESGKIGVTIKTSPDGPTIKPQPTQQVTPS--------QQQPFQDQQQAEKIAS---------- 261
              |:|...|.||:|.:...:.....:..:|:        :.|..:.:...:::.|          
 Frog   259 YMENGMQSVKIKSSEEDCEMGDPRRRLESPNSFNGDKTCKAQEEKTEHWKKRVESRVKINESNGS 323

  Fly   262 --EAATQLKSEQQATPLATEAINTTPAESGAEEEEV-----------ANEEGNQQAPQVP----- 308
              ..:.||...::....|:|:|:..|.:..::...:           |.|.........|     
 Frog   324 VDRGSVQLSGLRRTYSTASESIHDQPLQLTSKSNHIPLSNRTSSPIYAGEPYKDTVYTNPRKRCL 388

  Fly   309 SENNNIPKPCNNLAINQ----------KQPLTPLSPRALPPRFWL--------------PAKCNI 349
            ||.|...:.|.....::          |..|||::..|..|...|              .::|:.
 Frog   389 SEANGDRELCKKALASRSVSAPSTLECKAGLTPINVPAQEPDIILLDSDLDEPIDLRCVKSRCDS 453

  Fly   350 SNRV------------------------------VITDVTVNLETVTIRE 369
            ...|                              ||||||.|..|||.:|
 Frog   454 DQEVEKPEVQVTQKPQSVDVDVCESEFKPFFGNIVITDVTANCLTVTFKE 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PcNP_524199.1 CHROMO 25..77 CDD:214605 29/81 (36%)
cbx4NP_001096327.1 Chromo 13..60 CDD:278797 27/46 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 70 1.000 Domainoid score I9355
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm48625
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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